Events:UCLA-Slicer-Training-11-2010 - Revision history

Grundlett: Text replacement - "[http://www.na-mic.org/Wiki/images/" to "[https://na-mic.org/w/images/"

2017-07-10T18:27:02Z

Text replacement - "[http://www.na-mic.org/Wiki/images/" to "[https://na-mic.org/w/images/"

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2017-07-10T17:10:19Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

Spujol at 05:38, 30 November 2010

2010-11-30T05:38:44Z

Prastawa at 20:08, 12 November 2010

2010-11-12T20:08:18Z

Kikinis: /* Agenda */

2010-11-12T03:14:16Z

Agenda

Spujol at 22:52, 11 November 2010

2010-11-11T22:52:03Z

Spujol: /* Slicer Community */

2010-11-11T22:51:40Z

Slicer Community

Spujol at 22:51, 11 November 2010

2010-11-11T22:51:22Z

Spujol at 21:57, 11 November 2010

2010-11-11T21:57:59Z

Spujol: /* Notes on the Nrrd file format */

2010-11-11T21:47:55Z

Notes on the Nrrd file format

@@ Line 28: / Line 28: @@
 This format is used in Slicer to represent the necessary information about a DWI image volume, its anatomical orientation, and all the DWI-specific acquisition parameters for estimating the diffusion tensors. A detailed description of the Nrrd file format usage for DWI images and DTI data can be found [http://wiki.na-mic.org/Wiki/index.php/NAMIC_Wiki:DTI:Nrrd_format here].
-The [https://www.slicer.org/wiki/Modules:DicomToNRRD-3.6 DicomToNrrd module] in Slicer can be used to convert Dicom data into Nrrd. A detailed [http://www.na-mic.org/Wiki/images/7/77/SlicerTraining9_DTI-FromDicomToNrrd.ppt  tutorial] describes how to construct a nhdr file from a set of images, which can be in Dicom or in other format such as Nifti, and a list of known gradients, using the Teem Library.
+The [https://www.slicer.org/wiki/Modules:DicomToNRRD-3.6 DicomToNrrd module] in Slicer can be used to convert Dicom data into Nrrd. A detailed [https://na-mic.org/w/images/7/77/SlicerTraining9_DTI-FromDicomToNrrd.ppt  tutorial] describes how to construct a nhdr file from a set of images, which can be in Dicom or in other format such as Nifti, and a list of known gradients, using the Teem Library.
 == Local Organizer==

@@ Line 28: / Line 28: @@
 This format is used in Slicer to represent the necessary information about a DWI image volume, its anatomical orientation, and all the DWI-specific acquisition parameters for estimating the diffusion tensors. A detailed description of the Nrrd file format usage for DWI images and DTI data can be found [http://wiki.na-mic.org/Wiki/index.php/NAMIC_Wiki:DTI:Nrrd_format here].
-The [http://www.slicer.org/slicerWiki/index.php/Modules:DicomToNRRD-3.6 DicomToNrrd module] in Slicer can be used to convert Dicom data into Nrrd. A detailed [http://www.na-mic.org/Wiki/images/7/77/SlicerTraining9_DTI-FromDicomToNrrd.ppt  tutorial] describes how to construct a nhdr file from a set of images, which can be in Dicom or in other format such as Nifti, and a list of known gradients, using the Teem Library.
+The [https://www.slicer.org/wiki/Modules:DicomToNRRD-3.6 DicomToNrrd module] in Slicer can be used to convert Dicom data into Nrrd. A detailed [http://www.na-mic.org/Wiki/images/7/77/SlicerTraining9_DTI-FromDicomToNrrd.ppt  tutorial] describes how to construct a nhdr file from a set of images, which can be in Dicom or in other format such as Nifti, and a list of known gradients, using the Teem Library.
 == Local Organizer==
@@ Line 51: / Line 51: @@
 * Mac Darwin: [http://www.na-mic.org/Slicer/Download/Release/darwin-x86/Slicer3-3.6.1-2010-08-20-darwin-x86.tar.gz Slicer3-3.6.1-2010-08-20-darwin-x86]
-Please download the [[media:Slicer3VisualizationDataset.zip | 3D Visualization dataset]], [http://www.slicer.org/slicerWiki/index.php/File:EditorTutorialDataset.zip Editor dataset], and [http://www.slicer.org/slicerWiki/images/8/88/Slicer3_Tutorial_ManualRegistration_ExampleDataset.zip Registration dataset] in preparation for the workshop.
+Please download the [[media:Slicer3VisualizationDataset.zip | 3D Visualization dataset]], [https://www.slicer.org/wiki/File:EditorTutorialDataset.zip Editor dataset], and [http://www.slicer.org/slicerWiki/images/8/88/Slicer3_Tutorial_ManualRegistration_ExampleDataset.zip Registration dataset] in preparation for the workshop.
 == Slicer3 Training Survey ==

← Older revision		Revision as of 05:38, 30 November 2010
Line 1:		Line 1:
	== Logistics ==		== Logistics ==
		+	{\| class="wikitable2" border="1" cellpadding="8" cellspacing="1"
		+	\| style="width:25%" \|[[Image:NAMIC.jpg‎]]
		+	\| style="width:25%" \|[[Image:Logo_nac.gif‎]]
		+	\| style="width:25%" \|[[Image:NCIGTlogo.gif]]
		+	\| style="width:25%" \|[[Image:Catalyst_logo_final.jpg\|150px]]
		+	\|}

	Location: Neuroscience Research Building (NRB), Room 470, UCLA campus.		Location: Neuroscience Research Building (NRB), Room 470, UCLA campus.

@@ Line 13: / Line 13: @@
 *12:15-1:00 pm  Lunch
 *1:00-2:15 pm [[media:ManualRegistration_UCLA2010.pdf | Image Registration ]] and [[media:InteractiveEditorTutorial_UCLA2010_SoniaPujol.pdf | Interactive Editing ]](Sonia Pujol)
-*2:15-2:45 pm Atlas-Based Classification (Marcel Prastawa)
+*2:15-2:45 pm [[media:NAMIC-ABC-UCLA-08Nov2010.ppt|Atlas-Based Classification]] (Marcel Prastawa)
 *2:45-3:00 pm [[media:TBIDataAnalysis_SoniaPujol.pdf | TBI Cases]] (Sonia Pujol)[http://www.na-mic.org/Wiki/index.php/Projects:RegistrationLibrary:RegLib_C31 TBI Registration Case Library]
 *2:45-3:00 pm Questions from the Audience and Discussion (Ron Kikinis/Sonia Pujol)

@@ Line 9: / Line 9: @@
 == Agenda ==
 *9:00-10:00 am Computer setup assistance by the instructors
-*10:00-10:30 am Introduction to NA-MIC and the Slicer community (Ron Kikinis)
+*10:00-10:30 am [[media:Kikinis-NA-MIC-2010-09-20.ppt|Introduction to NA-MIC]] and [[media:Kikinis-Slicer Community-2010-09-20.ppt|the Slicer community]] (Ron Kikinis)
 *10:30-12:15 pm [[media:Slicer3_DataLoadingAndVisualization_UCLA2010_SoniaPujol.pdf | Data Loading and 3D Visualization ]](Sonia Pujol)
 *12:15-1:00 pm  Lunch

@@ Line 48: / Line 48: @@
 == Slicer3 Training Survey ==
+[http://www.surveymonkey.com/s/GZDXKXQ Please click here to take the Slicer3 Training Survey]
 == Slicer Community ==
 Participants are invited to join the [http://www.slicer.org/pages/Mailinglist Slicer user and Slicer developer community]  for questions and feature requests related to the software.
   [[Events#2010|Back to Events 2010]]

← Older revision		Revision as of 22:51, 11 November 2010
Line 51:		Line 51:
	[http://www.surveymonkey.com/s/GZDXKXQ Click here to take the Slicer3 Training Survey]		[http://www.surveymonkey.com/s/GZDXKXQ Click here to take the Slicer3 Training Survey]

		+
		+	== Slicer Community ==
		+
		+	Participants are invited to join the [http://www.slicer.org/pages/Mailinglist Slicer user and Slicer developer communities] for questions and feature requests related to the software.

	[[Events#2010\|Back to Events 2010]]		[[Events#2010\|Back to Events 2010]]

@@ Line 20: / Line 20: @@
 The Nrrd file format, which is part of the NA-MIC kit, accurately represents N-dimensional raster information for scientific visualization and medical image processing.
-This format is used in Slicer to represent the necessary information about a DWI image volume, its anatomical orientation, and all the DWI-specific acquisition parameters for estimating the diffusion tensors, such as the measurement frame. A detailed description of the Nrrd file format use for DWI images and DTI data can be found [http://wiki.na-mic.org/Wiki/index.php/NAMIC_Wiki:DTI:Nrrd_format here].
+This format is used in Slicer to represent the necessary information about a DWI image volume, its anatomical orientation, and all the DWI-specific acquisition parameters for estimating the diffusion tensors. A detailed description of the Nrrd file format usage for DWI images and DTI data can be found [http://wiki.na-mic.org/Wiki/index.php/NAMIC_Wiki:DTI:Nrrd_format here].
 The [http://www.slicer.org/slicerWiki/index.php/Modules:DicomToNRRD-3.6 DicomToNrrd module] in Slicer can be used to convert Dicom data into Nrrd. To convert data from other file formats, such as Nifti, a [http://www.na-mic.org/Wiki/images/7/77/SlicerTraining9_DTI-FromDicomToNrrd.ppt  tutorial ] describes how to construct a nhdr file from a set of images and a list of known gradients using the Teem library.