Events:UCSF-Slicer-Training-11-2010 - Revision history

Grundlett: Text replacement - "[http://www.na-mic.org/Wiki/images/" to "[https://na-mic.org/w/images/"

2017-07-10T18:27:08Z

Text replacement - "[http://www.na-mic.org/Wiki/images/" to "[https://na-mic.org/w/images/"

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2017-07-10T17:45:39Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

Marianna at 20:37, 9 August 2011

2011-08-09T20:37:00Z

Kikinis at 12:50, 30 November 2010

2010-11-30T12:50:32Z

Spujol at 05:38, 30 November 2010

2010-11-30T05:38:12Z

Kikinis at 03:12, 12 November 2010

2010-11-12T03:12:12Z

Spujol at 22:52, 11 November 2010

2010-11-11T22:52:46Z

Spujol at 21:57, 11 November 2010

2010-11-11T21:57:02Z

Spujol at 21:55, 11 November 2010

2010-11-11T21:55:36Z

Spujol at 21:48, 11 November 2010

2010-11-11T21:48:17Z

@@ Line 40: / Line 40: @@
 This format is used in Slicer to represent the necessary information about a DWI image volume, its anatomical orientation, and all the DWI-specific acquisition parameters for estimating the diffusion tensors. A detailed description of the Nrrd file format usage for DWI images and DTI data can be found [http://wiki.na-mic.org/Wiki/index.php/NAMIC_Wiki:DTI:Nrrd_format here].
-The [https://www.slicer.org/wiki/Modules:DicomToNRRD-3.6 DicomToNrrd module] in Slicer can be used to convert Dicom data into Nrrd. A detailed [http://www.na-mic.org/Wiki/images/7/77/SlicerTraining9_DTI-FromDicomToNrrd.ppt  tutorial] describes how to construct a nhdr file from a set of images, which can be in Dicom or in other format such as Nifti, and a list of known gradients, using the Teem Library.
+The [https://www.slicer.org/wiki/Modules:DicomToNRRD-3.6 DicomToNrrd module] in Slicer can be used to convert Dicom data into Nrrd. A detailed [https://na-mic.org/w/images/7/77/SlicerTraining9_DTI-FromDicomToNrrd.ppt  tutorial] describes how to construct a nhdr file from a set of images, which can be in Dicom or in other format such as Nifti, and a list of known gradients, using the Teem Library.
 == Local Organizers==

@@ Line 40: / Line 40: @@
 This format is used in Slicer to represent the necessary information about a DWI image volume, its anatomical orientation, and all the DWI-specific acquisition parameters for estimating the diffusion tensors. A detailed description of the Nrrd file format usage for DWI images and DTI data can be found [http://wiki.na-mic.org/Wiki/index.php/NAMIC_Wiki:DTI:Nrrd_format here].
-The [http://www.slicer.org/slicerWiki/index.php/Modules:DicomToNRRD-3.6 DicomToNrrd module] in Slicer can be used to convert Dicom data into Nrrd. A detailed [http://www.na-mic.org/Wiki/images/7/77/SlicerTraining9_DTI-FromDicomToNrrd.ppt  tutorial] describes how to construct a nhdr file from a set of images, which can be in Dicom or in other format such as Nifti, and a list of known gradients, using the Teem Library.
+The [https://www.slicer.org/wiki/Modules:DicomToNRRD-3.6 DicomToNrrd module] in Slicer can be used to convert Dicom data into Nrrd. A detailed [http://www.na-mic.org/Wiki/images/7/77/SlicerTraining9_DTI-FromDicomToNrrd.ppt  tutorial] describes how to construct a nhdr file from a set of images, which can be in Dicom or in other format such as Nifti, and a list of known gradients, using the Teem Library.
 == Local Organizers==

@@ Line 4: / Line 4: @@
 {| class="wikitable2" border="1" cellpadding="8" cellspacing="1"
 | style="width:25%" |[[Image:NAMIC.jpg‎]]
 | style="width:25%" |[[Image:Logo_nac.gif‎]]

@@ Line 1: / Line 1: @@
 [[Image:UCSF_Event1.jpg|thumb|300px|Class photo 1]]
 [[Image:UCSF_Event2.jpg|thumb|300px|Class photo 2]]
@@ Line 11: / Line 10: @@
 |}
 Location: [http://www.radiology.ucsf.edu/china-basin-imaging UCSF (3rd floor) China basin campus]

← Older revision		Revision as of 05:38, 30 November 2010
Line 4:		Line 4:
	[[Image:UCSF_Event3.jpg\|thumb\|300px\|Cable car]]		[[Image:UCSF_Event3.jpg\|thumb\|300px\|Cable car]]

		+	{\| class="wikitable2" border="1" cellpadding="8" cellspacing="1"
		+	\| style="width:25%" \|[[Image:NAMIC.jpg‎]]
		+	\| style="width:25%" \|[[Image:Logo_nac.gif‎]]
		+	\| style="width:25%" \|[[Image:NCIGTlogo.gif]]
		+	\| style="width:25%" \|[[Image:Catalyst_logo_final.jpg\|150px]]
		+	\|}

@@ Line 12: / Line 12: @@
 '''Registration''': To sign-up for this event, please fill in the [[media:RegistrationForm_SlicerWorkshop_UCSF_Nov9_2010.doc‎ | registration form]] and send it by e-mail to Jason Crane, PhD [jason.crane at ucsf.edu] before Friday November 5.
-== Tentative Agenda  ==
+== Agenda  ==
 *8:45-9:00 am Computer setup assistance by the instructors
 *9:00-9:15 am Welcome and Goals of the Workshop (Ron Kikinis/Sonia Pujol)
-*9:15-9:45 am Introduction to NA-MIC and the Slicer community (Ron Kikinis)
+*9:15-9:45 am [[media:Kikinis-NA-MIC-2010-09-20.ppt|Introduction to NA-MIC]] and [[media:Kikinis-Slicer Community-2010-09-20.ppt|the Slicer community]] (Ron Kikinis)
 *9:45-10:45 am [[media:Slicer3_DataLoadingAndVisualization_UCSF2010_SoniaPujol.pdf‎ | Data Loading and 3D Visualization ]] (part1)(Sonia Pujol)
 *10:45-11:00 am Coffee break

← Older revision		Revision as of 22:52, 11 November 2010
Line 63:		Line 63:
	[http://www.surveymonkey.com/s/GZDXKXQ Click here to take the Slicer3 Training Survey]		[http://www.surveymonkey.com/s/GZDXKXQ Click here to take the Slicer3 Training Survey]

		+	== Slicer Community ==
		+	Participants are invited to join the [http://www.slicer.org/pages/Mailinglist Slicer user and Slicer developer community] for questions and feature requests related to the software.

	[[Events#2010\|Back to Events 2010]]		[[Events#2010\|Back to Events 2010]]

@@ Line 32: / Line 32: @@
 This format is used in Slicer to represent the necessary information about a DWI image volume, its anatomical orientation, and all the DWI-specific acquisition parameters for estimating the diffusion tensors. A detailed description of the Nrrd file format usage for DWI images and DTI data can be found [http://wiki.na-mic.org/Wiki/index.php/NAMIC_Wiki:DTI:Nrrd_format here].
-The [http://www.slicer.org/slicerWiki/index.php/Modules:DicomToNRRD-3.6 DicomToNrrd module] in Slicer can be used to convert Dicom data into Nrrd. To convert data from other file formats, such as Nifti, a [http://www.na-mic.org/Wiki/images/7/77/SlicerTraining9_DTI-FromDicomToNrrd.ppt  tutorial ] describes how to construct a nhdr file from a set of images and a list of known gradients using the Teem library.
+The [http://www.slicer.org/slicerWiki/index.php/Modules:DicomToNRRD-3.6 DicomToNrrd module] in Slicer can be used to convert Dicom data into Nrrd. Alternatively, a detailed [http://www.na-mic.org/Wiki/images/7/77/SlicerTraining9_DTI-FromDicomToNrrd.ppt  tutorial] describes how to construct a nhdr file from a set of images, which can be in non-Dicom format such as Nifti, and a list of known gradients using the Teem Library.
 == Local Organizers==

@@ Line 30: / Line 30: @@
 The Nrrd file format, which is part of the NA-MIC kit, accurately represents N-dimensional raster information for scientific visualization and medical image processing.
-This format is used in Slicer to represent the necessary information about a DWI image volume, its anatomical orientation, and all the DWI-specific acquisition parameters for estimating the diffusion tensors, such as the measurement frame. A detailed description of the Nrrd file format use for DWI images and DTI data can be found [http://wiki.na-mic.org/Wiki/index.php/NAMIC_Wiki:DTI:Nrrd_format here].
+This format is used in Slicer to represent the necessary information about a DWI image volume, its anatomical orientation, and all the DWI-specific acquisition parameters for estimating the diffusion tensors. A detailed description of the Nrrd file format usage for DWI images and DTI data can be found [http://wiki.na-mic.org/Wiki/index.php/NAMIC_Wiki:DTI:Nrrd_format here].
 The [http://www.slicer.org/slicerWiki/index.php/Modules:DicomToNRRD-3.6 DicomToNrrd module] in Slicer can be used to convert Dicom data into Nrrd. To convert data from other file formats, such as Nifti, a [http://www.na-mic.org/Wiki/images/7/77/SlicerTraining9_DTI-FromDicomToNrrd.ppt  tutorial ] describes how to construct a nhdr file from a set of images and a list of known gradients using the Teem library.