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	<id>https://www.na-mic.org/w/index.php?action=history&amp;feed=atom&amp;title=HybridProbe</id>
	<title>HybridProbe - Revision history</title>
	<link rel="self" type="application/atom+xml" href="https://www.na-mic.org/w/index.php?action=history&amp;feed=atom&amp;title=HybridProbe"/>
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	<updated>2026-06-04T20:33:22Z</updated>
	<subtitle>Revision history for this page on the wiki</subtitle>
	<generator>MediaWiki 1.33.0</generator>
	<entry>
		<id>https://www.na-mic.org/w/index.php?title=HybridProbe&amp;diff=72904&amp;oldid=prev</id>
		<title>Lchauvin: /* Tips */</title>
		<link rel="alternate" type="text/html" href="https://www.na-mic.org/w/index.php?title=HybridProbe&amp;diff=72904&amp;oldid=prev"/>
		<updated>2012-01-05T21:32:45Z</updated>

		<summary type="html">&lt;p&gt;&lt;span dir=&quot;auto&quot;&gt;&lt;span class=&quot;autocomment&quot;&gt;Tips&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
&lt;table class=&quot;diff diff-contentalign-left&quot; data-mw=&quot;interface&quot;&gt;
				&lt;col class=&quot;diff-marker&quot; /&gt;
				&lt;col class=&quot;diff-content&quot; /&gt;
				&lt;col class=&quot;diff-marker&quot; /&gt;
				&lt;col class=&quot;diff-content&quot; /&gt;
				&lt;tr class=&quot;diff-title&quot; lang=&quot;en&quot;&gt;
				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #222; text-align: center;&quot;&gt;← Older revision&lt;/td&gt;
				&lt;td colspan=&quot;2&quot; style=&quot;background-color: #fff; color: #222; text-align: center;&quot;&gt;Revision as of 21:32, 5 January 2012&lt;/td&gt;
				&lt;/tr&gt;&lt;tr&gt;&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot; id=&quot;mw-diff-left-l40&quot; &gt;Line 40:&lt;/td&gt;
&lt;td colspan=&quot;2&quot; class=&quot;diff-lineno&quot;&gt;Line 40:&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;=Tips=&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;=Tips=&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;* Orientation of EM and Optical system are different because coordinate system are different (not possible to &amp;quot;fix it&amp;quot;), so I created a model flipped, and use it to display EM tracker&lt;/div&gt;&lt;/td&gt;&lt;td class='diff-marker'&gt; &lt;/td&gt;&lt;td style=&quot;background-color: #f8f9fa; color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;* Orientation of EM and Optical system are different because coordinate system are different (not possible to &amp;quot;fix it&amp;quot;), so I created a model flipped, and use it to display EM tracker&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt; &lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;font-weight: bold; text-decoration: none;&quot;&gt;* Aurora configuration (from IGSTK):&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt; &lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;font-weight: bold; text-decoration: none;&quot;&gt;&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt; &lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;font-weight: bold; text-decoration: none;&quot;&gt;  communication-&amp;gt;SetBaudRate(SerialCommunication::BaudRate9600);                   // Baud: 9600&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt; &lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;font-weight: bold; text-decoration: none;&quot;&gt;  communication-&amp;gt;SetDataBits(SerialCommunication::DataBits8);                      // DataBits: 8&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt; &lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;font-weight: bold; text-decoration: none;&quot;&gt;  communication-&amp;gt;SetParity(SerialCommunication::NoParity);                         // Parity: 0&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt; &lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;font-weight: bold; text-decoration: none;&quot;&gt;  communication-&amp;gt;SetStopBits(SerialCommunication::StopBits1);                      // StopBits: 1&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;tr&gt;&lt;td colspan=&quot;2&quot;&gt; &lt;/td&gt;&lt;td class='diff-marker'&gt;+&lt;/td&gt;&lt;td style=&quot;color: #222; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;&quot;&gt;&lt;div&gt;&lt;ins style=&quot;font-weight: bold; text-decoration: none;&quot;&gt;  communication-&amp;gt;SetHardwareHandshake(SerialCommunication::HandshakeOff);          // HandShake: 0&lt;/ins&gt;&lt;/div&gt;&lt;/td&gt;&lt;/tr&gt;
&lt;/table&gt;</summary>
		<author><name>Lchauvin</name></author>
		
	</entry>
	<entry>
		<id>https://www.na-mic.org/w/index.php?title=HybridProbe&amp;diff=72903&amp;oldid=prev</id>
		<title>Lchauvin: Created page with '=Timeline= {|style=&quot;border-collapse: collapse; border-width: 1px; border-style: solid; border-color: #000&quot; cellpadding=&quot;1&quot; width=&quot;40%&quot; ! align=&quot;center&quot; style=&quot;border-style: solid…'</title>
		<link rel="alternate" type="text/html" href="https://www.na-mic.org/w/index.php?title=HybridProbe&amp;diff=72903&amp;oldid=prev"/>
		<updated>2012-01-05T21:31:51Z</updated>

		<summary type="html">&lt;p&gt;Created page with &amp;#039;=Timeline= {|style=&amp;quot;border-collapse: collapse; border-width: 1px; border-style: solid; border-color: #000&amp;quot; cellpadding=&amp;quot;1&amp;quot; width=&amp;quot;40%&amp;quot; ! align=&amp;quot;center&amp;quot; style=&amp;quot;border-style: solid…&amp;#039;&lt;/p&gt;
&lt;p&gt;&lt;b&gt;New page&lt;/b&gt;&lt;/p&gt;&lt;div&gt;=Timeline=&lt;br /&gt;
{|style=&amp;quot;border-collapse: collapse; border-width: 1px; border-style: solid; border-color: #000&amp;quot; cellpadding=&amp;quot;1&amp;quot; width=&amp;quot;40%&amp;quot;&lt;br /&gt;
! align=&amp;quot;center&amp;quot; style=&amp;quot;border-style: solid; border-width: 1px&amp;quot;| Task&lt;br /&gt;
! align=&amp;quot;center&amp;quot; style=&amp;quot;border-style: solid; border-width: 1px&amp;quot;| Status&lt;br /&gt;
! align=&amp;quot;center&amp;quot; style=&amp;quot;border-style: solid; border-width: 1px&amp;quot;| Deadline&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot; style=&amp;quot;border-style: solid; border-width: 1px&amp;quot;| Connect EM and Optical tracking system to Slicer&lt;br /&gt;
| style=&amp;quot;border-style: solid; border-width: 1px; background-color:green&amp;quot;|&lt;br /&gt;
| align=&amp;quot;center&amp;quot; style=&amp;quot;border-style: solid; border-width: 1px&amp;quot;| -&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot; style=&amp;quot;border-style: solid; border-width: 1px&amp;quot;| Create HybridProbe Module to register them&lt;br /&gt;
| style=&amp;quot;border-style: solid; border-width: 1px; background-color:green&amp;quot;|&lt;br /&gt;
| align=&amp;quot;center&amp;quot; style=&amp;quot;border-style: solid; border-width: 1px&amp;quot;| -&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot; style=&amp;quot;border-style: solid; border-width: 1px&amp;quot;| Install and switch to BrainLab system (OpenIGTLink included version)&lt;br /&gt;
| style=&amp;quot;border-style: solid; border-width: 1px; background-color:red&amp;quot;|&lt;br /&gt;
| align=&amp;quot;center&amp;quot; style=&amp;quot;border-style: solid; border-width: 1px&amp;quot;| -&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot; style=&amp;quot;border-style: solid; border-width: 1px&amp;quot;| Design and create HybridProbe with Sam&lt;br /&gt;
| style=&amp;quot;border-style: solid; border-width: 1px; background-color:red&amp;quot;|&lt;br /&gt;
| align=&amp;quot;center&amp;quot; style=&amp;quot;border-style: solid; border-width: 1px&amp;quot;| -&lt;br /&gt;
|-&lt;br /&gt;
| align=&amp;quot;center&amp;quot; style=&amp;quot;border-style: solid; border-width: 1px&amp;quot;| Test and validate HybridProbe&lt;br /&gt;
| style=&amp;quot;border-style: solid; border-width: 1px; background-color:red&amp;quot;|&lt;br /&gt;
| align=&amp;quot;center&amp;quot; style=&amp;quot;border-style: solid; border-width: 1px&amp;quot;| -&lt;br /&gt;
|}&lt;br /&gt;
&lt;br /&gt;
=Development=&lt;br /&gt;
===Connect EM and optical system to Slicer===&lt;br /&gt;
* Use NDI Toolkit to connect and calibrate Aurora and Polaris systems&lt;br /&gt;
* Only one pivot calibration to calibrate both systems&lt;br /&gt;
===Create HybridProbe Module to register them===&lt;br /&gt;
* Select several points, record values of each system, and calculate a rigid registration using pair points registration&lt;br /&gt;
* Drop EM sensor under transformation to register it to the optical one&lt;br /&gt;
===Install and switch to Brainlab system===&lt;br /&gt;
* BrainLab has been updated in AMIGO to the version including OpenIGTLink&lt;br /&gt;
* Switching to BrainLab include bringing Aurora in OR. Are we allowed to ?&lt;br /&gt;
* How to synchronize EM and Optical values ?&lt;br /&gt;
&lt;br /&gt;
=Tips=&lt;br /&gt;
* Orientation of EM and Optical system are different because coordinate system are different (not possible to &amp;quot;fix it&amp;quot;), so I created a model flipped, and use it to display EM tracker&lt;/div&gt;</summary>
		<author><name>Lchauvin</name></author>
		
	</entry>
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