IGT:ToolKit/Prostate-Planning - Revision history

Dpace at 06:11, 5 January 2009

2009-01-05T06:11:58Z

Dpace at 06:01, 5 January 2009

2009-01-05T06:01:57Z

Dpace at 04:27, 5 January 2009

2009-01-05T04:27:38Z

Dpace at 18:17, 26 November 2008

2008-11-26T18:17:12Z

Dpace at 20:34, 25 November 2008

2008-11-25T20:34:37Z

Dpace at 20:27, 25 November 2008

2008-11-25T20:27:03Z

Dpace at 20:24, 25 November 2008

2008-11-25T20:24:28Z

Noby at 17:45, 24 November 2008

2008-11-24T17:45:37Z

Dpace at 02:08, 9 October 2008

2008-10-09T02:08:50Z

Dpace at 01:55, 9 October 2008

2008-10-09T01:55:18Z

@@ Line 17: / Line 17: @@
 * Tutorial slides for the MRI-guided prostate interventions tutorial:  [[Media:MRGuidedProstateInterventions.pdf| pdf]] (recommended) or [[Media:MRGuidedProstateInterventions.ppt | ppt]]
 * [[Media:MRGuidedProstateInterventions.zip| MRI-guided prostate interventions tutorial dataset]] - contains:
-** Pre-operative high-quality MRI image
+** For non-rigid image registration:  pre-operative high-quality MRI image and intra-operative MRI image
-** Intra-operative MRI image
+** For manual segmentation and model making:  T1 and T2 MRI images and sample label map
 ==Software Installation Instructions==

@@ Line 10: / Line 10: @@
 * Clinical background on MRI-guided prostate interventions
 * Non-rigid image registration using B-splines
 ==Tutorial Materials==

@@ Line 23: / Line 23: @@
 ==People==
 * [http://www.spl.harvard.edu/~dpace Danielle Pace]
 * [http://www.spl.harvard.edu/~noby Nobuhiko Hata]

@@ Line 14: / Line 14: @@
 * Tutorial slides for the MRI-guided prostate interventions tutorial:  [[Media:MRGuidedProstateInterventions.pdf| pdf]] (recommended) or [[Media:MRGuidedProstateInterventions.ppt | ppt]]
-* [[Media:NeurosurgicalPlanningTutorialData.zip | MRI-guided prostate interventions tutorial dataset]] - contains:
+* [[Media:MRGuidedProstateInterventions.zip| MRI-guided prostate interventions tutorial dataset]] - contains:
 ** Pre-operative high-quality MRI image
 ** Intra-operative MRI image

@@ Line 3: / Line 3: @@
 Back to [[IGT:ToolKit|IGT:ToolKit]]
-=Neurosurgical Planning for Image Guided Therapy using Slicer3=
+=Prostate Therapy Planning Tutorial=
 ==Overview==
-This tutorial reviews Slicer3's Image Guided Therapy capabilities using the example of preoperative planning for neurosurgery.  It covers how to perform multiple tasks in Slicer3, including:
+This tutorial gives an example of using Slicer3 for MRI-guided prostate interventions.  Topics covered include:
-* Image registration
+* Clinical background on MRI-guided prostate interventions
-* Segmentation and model making
+* Non-rigid image registration using B-splines
 ==Tutorial Materials==
-==Bonus Materials==
+* Tutorial slides for the MRI-guided prostate interventions tutorial:  [[Media:MRGuidedProstateInterventions.pdf| pdf]] (recommended) or [[Media:MRGuidedProstateInterventions.ppt | ppt]]
-This is a subset of the data above, which demonstrates some of the capabilities of the tractography package in Slicer 3.3. Snapshots 1-4 demonstrate a progression of the analysis of the interrelation of the morphology and DTI.
+* [[Media:NeurosurgicalPlanningTutorialData.zip | MRI-guided prostate interventions tutorial dataset]] - contains:
-#general view
+** Pre-operative high-quality MRI image
-#location of the precentral gyrus based the surface of the white matter
+** Intra-operative MRI image
 ==Software Installation Instructions==
@@ Line 36: / Line 24: @@
 * [http://www.spl.harvard.edu/~dpace Danielle Pace]
 * [http://www.spl.harvard.edu/~noby Nobuhiko Hata]

← Older revision		Revision as of 20:27, 25 November 2008
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−	[[Image:~~NeurosurgicalPlanningOverview~~.~~png~~\|300px\|thumb]]	+	[[Image:ProstatePlanningOverview.jpg\|300px\|thumb]]

	Back to [[IGT:ToolKit\|IGT:ToolKit]]		Back to [[IGT:ToolKit\|IGT:ToolKit]]

← Older revision	Revision as of 20:24, 25 November 2008
Line 1:	Line 1:
	+	[[Image:NeurosurgicalPlanningOverview.png\|300px\|thumb]]
	+
	+	Back to [[IGT:ToolKit\|IGT:ToolKit]]
	+
	+	=Neurosurgical Planning for Image Guided Therapy using Slicer3=
	+
	+	==Overview==
	+
	+	This tutorial reviews Slicer3's Image Guided Therapy capabilities using the example of preoperative planning for neurosurgery. It covers how to perform multiple tasks in Slicer3, including:
	+	* Image registration
	+	* Segmentation and model making
	+	* Diffusion Tensor Imaging and tractography
	+	* Using an atlas
	+
	+	==Tutorial Materials==
	+	* Tutorial slides for the neurosurgical planning tutorial: [[Media:ImageGuidedTherapyPlanning.pdf \| pdf]] (recommended) or [[Media:ImageGuidedTherapyPlanning.ppt \| ppt]]
	+	* [[Media:NeurosurgicalPlanningTutorialData.zip \| Neurosurgical planning tutorial dataset]] - contains:
	+	** Patient dataset
	+	** SPL-PNL brain atlas
	+	** MRML scene registering the patient with the atlas
	+	** MRML scene registering the patient's anatomical MRI with the patient's DTI
	+	** MRML scene registering of precomputed tensor data for the patient's DTI
	+
	+	==Bonus Materials==
	+	This is a subset of the data above, which demonstrates some of the capabilities of the tractography package in Slicer 3.3. Snapshots 1-4 demonstrate a progression of the analysis of the interrelation of the morphology and DTI.
	+	#general view
	+	#location of the precentral gyrus based the surface of the white matter
	+	#peritumoral seeding of tractography: The general appearance is that of a "ball of spaghettis" with two tentacles,
	+	#exploration of the "tentacles": fiducial based seeding in the cerebral peduncle and in the vicinity of Brocca's area reveal potential corticospinal tract and acuate fasciculus
	+	*[[media:NeurosurgDTIdemo2008.zip\|Original MRML scene and data in a zip file]]
	+
	+	==Software Installation Instructions==
	+	Go to the [http://wiki.na-mic.org/Wiki/index.php/IGT:ToolKit/Install-Slicer3 Slicer3 Install] site.
	+
	+	==People==
	+	* [http://www.spl.harvard.edu/~dpace Danielle Pace]
	+	* [http://www.spl.harvard.edu/~noby Nobuhiko Hata]
	+
	+

← Older revision		Revision as of 17:45, 24 November 2008
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−	~~=THIS PAGE IS UNDER CONSTRUCTION=~~
−	~~=THIS PAGE IS UNDER CONSTRUCTION=~~
−	~~=THIS PAGE IS UNDER CONSTRUCTION=~~

−	~~=Scenario=~~
−	~~--[[User:Noby\|Noby]] 14:50, 30 September 2008 (UTC)~~
−
−	~~#intro like Neuro tutorial~~
−	~~#accessing image NCIGT image database~~
−	~~#Pre-op data loading~~
−	~~#Intra-op data loading~~
−	~~#affine registration~~
−	~~#deformable registration~~
−	~~#blending~~

	[[Media:MRGuidedProstateInterventions.ppt \|		[[Media:MRGuidedProstateInterventions.ppt \|

@@ Line 15: / Line 15: @@
 [[Media:MRGuidedProstateInterventions.ppt |
-Preliminary version for London training event]]
+Final version for London training event]]
 Dataset for London training event:  [[Media:MRGuidedProstateInterventions.zip | MRGuidedProstateInterventions.zip]]

← Older revision		Revision as of 01:55, 9 October 2008
Line 16:		Line 16:
	[[Media:MRGuidedProstateInterventions.ppt \|		[[Media:MRGuidedProstateInterventions.ppt \|
	Preliminary version for London training event]]		Preliminary version for London training event]]
		+
		+	Dataset for London training event: [[Media:MRGuidedProstateInterventions.zip \| MRGuidedProstateInterventions.zip]]