ITK Registration Optimization - Revision history

Grundlett: Text replacement - "[http://www.na-mic.org/Wiki/images/" to "[https://na-mic.org/w/images/"

2017-07-10T18:27:04Z

Text replacement - "[http://www.na-mic.org/Wiki/images/" to "[https://na-mic.org/w/images/"

2017-07-10T18:07:29Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2010-01-21T14:23:42Z

2008-12-07T18:23:32Z

Instructions for Enabling the RegisterImages module

2008-11-05T21:56:03Z

2008-07-31T04:13:02Z

2008-07-31T04:11:11Z

BSpline, Dense Control-Point Grid, Different Subjects, Same Protocol, Head MRI

2008-07-31T03:54:21Z

Background Research

2008-07-31T03:53:56Z

Performance Measurement

2008-07-31T03:52:46Z

Hardware Platform Requirements and Use Cases

@@ Line 331: / Line 331: @@
 January 5, 2008 - Note: "Opt" results are not using the OptLinearInterpolateImageFunction.
-*[http://www.na-mic.org/Wiki/images/f/fe/MattesGetValue.pdf MattesMI GetValue Results]
+*[https://na-mic.org/w/images/f/fe/MattesGetValue.pdf MattesMI GetValue Results]
-*[http://www.na-mic.org/Wiki/images/1/1b/MattesBSplineGetValue.pdf MattesMI, b-spline interpolation and transform, GetValue Results]
+*[https://na-mic.org/w/images/1/1b/MattesBSplineGetValue.pdf MattesMI, b-spline interpolation and transform, GetValue Results]
-*[http://www.na-mic.org/Wiki/images/1/16/MeanSquaresGetValue.pdf MeanSquares GetValue Results]
+*[https://na-mic.org/w/images/1/16/MeanSquaresGetValue.pdf MeanSquares GetValue Results]
 *[http://wiki.na-mic.org/Wiki/images/c/c5/MattesGetValueAndDerivative.pdf MattesMI GetValueAndDerivative Results]
 *[http://wiki.na-mic.org/Wiki/images/f/f6/MattesBSplineGetValueAndDerivative.pdf MattesMI, b-spline interpolation and transform, GetValueAndDerivative Results]

@@ Line 1: / Line 1: @@
 {|border=1
-|This page contains a record of the development of RegisterImages.  For user documentation please see [http://www.slicer.org/slicerWiki/index.php/Modules:RegisterImages-Documentation-3.4 RegisterImages-Documentation-3.4]
+|This page contains a record of the development of RegisterImages.  For user documentation please see [https://www.slicer.org/wiki/Modules:RegisterImages-Documentation-3.4 RegisterImages-Documentation-3.4]
 |}
@@ Line 30: / Line 30: @@
 * Registers images which were not well resolved (or produced seg-faults) using other slicer registration modules:
-** http://www.slicer.org/slicerWiki/index.php/Slicer3:Registration
+** https://www.slicer.org/wiki/Slicer3:Registration
 ==== Difficult affine registration, Same subject, Different protocols: T2 and Fractional Anisotropy ====
@@ Line 350: / Line 350: @@
 * [[Non Rigid Registration]]
-* [http://www.slicer.org/slicerWiki/index.php/Slicer3:Performance_Analysis Slicer3:Performance_Analysis]
+* [https://www.slicer.org/wiki/Slicer3:Performance_Analysis Slicer3:Performance_Analysis]
 * [http://www.na-mic.org/Wiki/index.php/User:Barre/ITK_Registration_Optimization User:Barre/ITK Registration Optimization]
 * [[ITK_Registration_Optimization/Testing_And_Backward_Forward_Compatibility | Testing and ITK Backward Forward Compatibility]]

← Older revision		Revision as of 14:23, 21 January 2010
Line 1:		Line 1:
		+	{\|border=1
		+	\|This page contains a record of the development of RegisterImages. For user documentation please see [http://www.slicer.org/slicerWiki/index.php/Modules:RegisterImages-Documentation-3.4 RegisterImages-Documentation-3.4]
		+	\|}
		+
	= Slicer3 Module: RegisterImages =		= Slicer3 Module: RegisterImages =

@@ Line 247: / Line 247: @@
 = Instructions for Enabling the RegisterImages module =
-You need to change the build scripts (and perhaps their parameter files) to perform a cvs checkout of itk.  There are two sets of instructions, one for those building using the getbuildtest script and one for those building using the getbuildtest2 script.
+This module should now be built and distributed by default.   No special steps are needed to use this module.
 = Background =

@@ Line 366: / Line 366: @@
 * [[Non Rigid Registration]]
-* [[Slicer3:Performance_Analysis]]
+* [http://www.slicer.org/slicerWiki/index.php/Slicer3:Performance_Analysis Slicer3:Performance_Analysis]
 * [http://www.na-mic.org/Wiki/index.php/User:Barre/ITK_Registration_Optimization User:Barre/ITK Registration Optimization]
 * [[ITK_Registration_Optimization/Testing_And_Backward_Forward_Compatibility | Testing and ITK Backward Forward Compatibility]]

@@ Line 236: / Line 236: @@
 * See discussion on the "Registration Testing Parameters" tab.
-== Instructions for Enabling the RegisterImages module ==
 You need to change the build scripts (and perhaps their parameter files) to perform a cvs checkout of itk.  There are two sets of instructions, one for those building using the getbuildtest script and one for those building using the getbuildtest2 script.
-=== Using getbuildtest.tcl ===
+== Using getbuildtest.tcl ==
 If you are using getbuildtest.tcl script
@@ Line 247: / Line 256: @@
   SET ::ITK_TAG "HEAD"
-=== Using getbuildtest2.tcl ===
+== Using getbuildtest2.tcl ==
 If you are using getbuildtest2.tcl
 * In the file Slicer3/slicer_variables2.tcl
@@ Line 256: / Line 265: @@
    runcmd cvs -d :pserver:anonymous@www.itk.org:/cvsroot/Insight co Insight
-=== Done ===
+== Compile ==
 * With the above completed, perform getbuildtest.tcl or getbuildtest2.tcl as normal.
 * Please direct questions/comments to the slicer developers' list.
 = Background =

@@ Line 98: / Line 98: @@
 {|
 |-
-| [[Image:RegisterImages-Normal002-004-bspline2-setup-2008-07-30.png|thumb|250px|Setup: UNC Normal 002 (fixed) with UNC Normal 004 (moving)]]
+| [[Image:RegisterImages-Normal002-004-bspline2-setup-2008-07-30.png|thumb|250px|PipelineBSpline Results: UNC Normal 002 (fixed) with UNC Normal 004 (moving), Default Options]]
-| [[Image:RegisterImages-Normal002-004-bspline2-results-2008-07-30.png|thumb|250px|PipelineAffine Results: RegisterImages, Options: MinimizeMemory and ControlPointSpacing=15 pixels (vs. default ControlPointSpacing=40 pixels) (2008-07-30)]]
+| [[Image:RegisterImages-Normal002-004-bspline2-results-2008-07-30.png|thumb|250px|PipelineBSpline Results: RegisterImages, Options: MinimizeMemory and ControlPointSpacing=15 pixels (vs. default ControlPointSpacing=40 pixels) (2008-07-30)]]
 |-
 |}
 ==== BSpline, (Default Options vs. Dense Control-Point Grid), Different Subjects, Same Protocol, Skull-Stripped Head MRI ====

@@ Line 371: / Line 371: @@
 * [[ITK_Registration_Optimization/Testing_And_Backward_Forward_Compatibility | Testing and ITK Backward Forward Compatibility]]
-= Performance Measurement =
+= Notes on Software Profiling Tools =
 * [http://www.lw-tech.com/index.php LTProf - simple profilter for Windows - Shareware]
 * [http://www.intel.com/cd/software/products/asmo-na/eng/vtune/vlin/239145.htm Intel's VTune for Linux] ($)

@@ Line 343: / Line 343: @@
 *# 16 core Opteron (SPL: john, ringo, paul, george)
 *# 16 core, Sun Fire, AMDOpteron (UNC: Styner)
 == Historic Results ==