Link Progress - Revision history

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2017-07-10T18:07:25Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2009-04-29T02:11:02Z

2009-04-29T02:04:19Z

2009-04-29T02:03:47Z

2009-04-29T01:56:56Z

2009-04-29T01:56:23Z

2009-04-29T01:52:26Z

2009-04-29T01:52:00Z

2009-04-29T01:25:02Z

2009-04-29T01:05:45Z

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   Stochastic tractography requires careful maintenance and on-going development improving its usability and performance.
-  To get the latest module documentation goes on the [http://www.slicer.org/slicerWiki/index.php/Modules:StochasticTractography-Documentation-3.4 Slicer 3.4 documentation]
+  To get the latest module documentation goes on the [https://www.slicer.org/wiki/Modules:StochasticTractography-Documentation-3.4 Slicer 3.4 documentation]
 ; A - Development of tractography workflow :

@@ Line 24: / Line 24: @@
 ; C – Study of limit cases (tract reconstruction issue) :
 :* optimal parameter setting e.g. number of path per voxel
 {|

@@ Line 26: / Line 26: @@
 :* optimal parameter setting e.g. number of path per voxel
 {|
-|[[File:arcu_1path.png|thumb|400px|Arcuate reconstruction with 1 path per voxel]]
+|[[File:arcu_1path.png|thumb|400px|Arcuate reconstruction with only 1 path per voxel]]
 |}

@@ Line 24: / Line 24: @@
 ; C – Study of limit cases (tract reconstruction issue) :
 :* reduction of sparse density/connectivity map with noisy dataset (1.5 Tesla)
 {|
@@ Line 38: / Line 43: @@
 |[[File:ACC_amy_s2.png|thumb|400px|Connection appears when ROI vicinity and brain mask (notion of unrestrictive 'white matter' mask) are applied (left superior view)]]
 |}
 :*  further algorythmic extensions if needed for dealing with specific reconstruction cases
 :** ROI optimization

@@ Line 26: / Line 26: @@
 :* reduction of sparse density/connectivity map with noisy dataset (1.5 Tesla)
 {|
-|[[File:cingul0.png|thumb|400px|Density map for cingulum based on 1.5 Tesla scan A]]
+|[[File:cingul.png|thumb|400px|Density map for cingulum based on 1.5 Tesla scan]]
 |}

@@ Line 11: / Line 11: @@
 ; A - Development of tractography workflow :
 :*  DWI image preprocessing (summer week 2009 project)
-:** denoising (Rician)
+:** denoising (Rician) - currently Gaussian (FWHM = Full Width Half Maximum)
 :** Eddy currents corrections
 :** EPI distortion correction
@@ Line 24: / Line 24: @@
 ; C – Study of limit cases (tract reconstruction issue) :
 :*  sensitivity to inputs (WM/ROIs) - needing criteria definition and algorythmic extensions as shown on the following example
 {|

@@ Line 10: / Line 10: @@
 ; A - Development of tractography workflow :
-:*  DWI image preprocessing
+:*  DWI image preprocessing (summer week 2009 project)
-:** denoising
+:** denoising (Rician)
 :** Eddy currents corrections
-:*  WM mask & ROIs creation
+:** EPI distortion correction
-:*  tensor estimation & visualization
+:*  WM mask & ROIs creation (integrated)
-:*  tracts reconstruction & visualization (should be useful to see tracts and not only the connectivity map)
+:*  tensor estimation & visualization (integrated)
-:*  connectivity maps creation & visualization
+:*  tracts reconstruction & visualization (integrated)
 ; B - Visualization of diffusion properties - test utilities :

@@ Line 32: / Line 32: @@
 |[[File:ACC_amy_s2.png|thumb|400px|Connection appears when ROI vicinity and brain mask (notion of unrestrictive 'white matter' mask) are applied (left superior view)]]
 |}
-:*  further algorythmic extensions if needed for dealing with specific reconstruction cases (tracts with multiple branches)
+:*  further algorythmic extensions if needed for dealing with specific reconstruction cases
-:** design of ROI optimization
+:** ROI optimization
 :** moving ROI
@@ Line 45: / Line 45: @@
 :** roi filtering from region A to region B and B to A (done)
 :* module release ready (done)
-:* bugfix (in progress)
+:* bugfix for release 3.4 (done)
 ; B - Visualization of diffusion properties :