Andy: Update from Wiki

2006-12-18T13:16:37Z

Update from Wiki

New page

* Include new assessments in HID with CALM/GAME

Clinical Assessments available in HID web app (2/3/2005)

- SAPS
- SANS
- Calgary Depression Scale
- Simpson Angus Scale
- Barnes Akathisia Rating Scale
- Fagerstrom Test for Nicotine Dependence
- Premorbid Adjustment Scale
- Abnormal Involuntary Movement Scale
- Beck Depression Scale
- Quick Mood Scale

=== Preparing Phase II assessments in your database using Clinical Assessment Layout Manager (CALM) ===

Before being able to use the hooked Phase2 assessments under HID web app version 1.5.2, you need to follow the following steps.

1) You need to have a placeholder record for the ontology source in your <tt>nc_ontologysource</tt> table. You need one record with the following column values (since some of them are site specific I gave some description how to populate them)

ONTOLOGYSOURCE = 'UMLS'
UNIQUEID = an integer unique within the records in this table
TABLEID = the tableid from the NC_TABLEID table
OWNER = the id of the owner of the record (UNIQUEID from NC_DATABASEUSER table for the owner of this record)
MODTIME = SYSDATE
SOURCEURI = 'no URI'
DESCRIPTION = 'just a placeholder'

DON'T FORGET to commit (using SQL*Plus COMMIT command) in Oracle SQL*Plus.

2) Make sure that the values of the <tt>NAME</tt> column for all rows in your <tt>NC_DATABASEUSER</tt> table are all '''upper case'''.

3) Get the latest CALM from the CVS

cvs checkout BIRN/cas_layout

4) Edit your $CAS_LAYOUT_HOME/conf/caslayout.properties file for database connection information.

5) run ant to build CALM

cd $CAS_LAYOUT_HOME
ant

6) In $CAS_LAYOUT_HOME/conf, copy log4j.properties.example to log4j.properties and replace ${DEST_PATH} with the directory pointed by $CAS_LAYOUT_HOME

7) Set CALM_HOME environment variable to $CAS_LAYOUT_HOME (for example /home/myusername/BIRN/cas_layout)

export CALM_HOME=/home/myusername/BIRN/cas_layout

8) Prepare the CALM invocation script by

cd $CAS_LAYOUT_HOME/bin
cp calm.sh.example calm.sh
chmod ug+x calm.sh

9) run CALM

calm.sh

10) From File Menu->Load , load one of the XML Layout files in the $CAS_LAYOUT_HOME/phase2 directory.

11) From Tools Menu select Save Assessment to DB option and press the Yes Button in the Saving Assessment Dialog Box to start saving the assessment meta-data to your database.

12) Repeat steps 10 & 11 for all the phase2 assessments in the $CAS_LAYOUT_HOME/phase2 directory.

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Mbirn: *Data Entry - Revision history

Andy: Update from Wiki