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2007-01-05T18:34:34Z

Update from Wiki

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BIRN AVI Workgroup

Next Meeting:

Morph BIRN Meeting (Miami)
March 3rd

Attendees:

James Fallon <jfallon@uci.edu>
Bruce Fischl <fischl@nmr.mgh.harvard.edu>
Jorge Jovicich <jovicich@nmr.mgh.harvard.edu>
Anthony Kolasny <akolasny@jhu.edu>
Steve Pieper <pieper@bwh.harvard.edu>
Polina Golland <polina@csail.mit.edu>
Mark James <mjames@ncmir.ucsd.edu>
AVI Mailing List <birn-av@nbirn.net>

<br /> Agenda:

# Review previous minutes and action items (10 min) - Kolasny
'''Action Items Summary'''<nowiki>: </nowiki>
## Identify people associated with BIRN-DUP project. (Pieper) '''done - see [[Mbirn:BIRNDUP|'''Mbirn'''<nowiki>:BIRNDUP</nowiki>]]'''
## See if Alex Joyner is still involved with Query Atlas development (Pieper) '''done - Alex is back 1/2 time at Greg's lab and is working on Query Atlas'''
## Include BIRN hippocampus data as an adendum for the Slicer Tutorial (Pieper,Aucoin)
## Contact Vicky Rowley <vrowley@ucsd.edu> about adding MIT software to BIRN/Rocks distribution. (Golland)
## Test interoperablility between MIT software and Freesurfer on BIRN/Rocks distribution. (Golland) <blockquote>'''2005.01.17''' - I just talked to Bruce Fischl, and we came up with a plan that will get my code integrated and let us use it on imaging data. Basically, the idea is for the MGH and the BWH engineers to come up with a simple interface the allows selection of subjects and transforms the data into the format I can read. We expect to have something running in the spring and to start generating results. I am enthused about it, because this local arrangement makes it easier to do the integration. Maybe then as a second stage, we will see how to integrate it with the HID interface. Hope this makes sense. I know Bruce discussed ti with Bruce Rosen and with Ron Kikinis, and they both supported it. </blockquote>
## Contact Christine Fennema <fennema@ucsd.edu> regarding clinical questions for Machine learning(Golland) <blockquote>'''2005.02.02''' Integration with '''mBIRN''' HID post-poned until Polina and Bruce local work is further along. </blockquote>
## Make use of the Wiki for AVI dissemination (Kolasny)
## Provide 2005 Human Brain mapping abstract information to the group. (Kolasny) <blockquote>'''2005.02.22''' - http://www.cis.jhu.edu/~anthony/hbm/SASHA-BIRN-HBM2005.pdf </blockquote>
## Provide Vicky Rowley <vrowley@ucsd.edu> a version of Freesurfer for the BIRN portal. (Fischl)
# Status reports for key areas (20 min)
## [[Segmentation_Tools|Segmentation Tools]] (B. Fischl, S. Pieper)
## [[Shape_analysis_Tools|Shape analysis Tools]] (A. Kolasny, S. Pieper) <blockquote>'''2005.02.22''' - Jason Minion <jminion@cis.jhu.edu> will work on a conversion routine for lddmm data to Haystack. </blockquote>
## [[MRI_Diffusion_Tools|MRI Diffusion Tools]] (J. Fallon, S. Pieper)
## [[Visualization_Tools|Visualization Tools]] (S. Pieper)
## [[Query_Atlas|Query Atlas]] (S. Pieper)
## [[Machine_Learning_Tools|Machine Learning Tools]] (P. Golland, T. Jaakkola, S. Pieper)
# New topics/Open forum (15 min) </ol>

Mbirn:avi-20050303 - Revision history

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