NA-MIC/Projects/NA-MIC Kit/Teem - Revision history

Melonakos at 18:53, 28 November 2007

2007-11-28T18:53:34Z

Pieper at 20:33, 26 April 2007

2007-04-26T20:33:23Z

Andy: Update from Wiki

2006-12-18T19:36:31Z

Update from Wiki

New page

Back to [[NA-MIC_Collaborations|NA-MIC_Collaborations]]

'''Objective:'''

* Extend the power of Slicer3 by integrating the Teem libraries and command-line tools (e.g. "unu").

'''Progress:'''

* Teem has been under active development since 1998, and was partially funded by [[NAC|NAC]], a collaborating project, in 2004-2006. The Teem training and dissemination efforts have leveraged the infrastructure setup by NA-MIC.
* The NRRD file format (from Teem) is the basis of the [[NAMIC_Wiki:DTI:Nrrd_format|NA-MIC DWI format]].
* A [http://public.kitware.com/dashboard.php?name=namic dashboard] has been set up to monitor compiler warnings and errors on a range of operating systems, platforms and compilers.
* Starting with Slicer 2.6, Teem is included and built with Slicer. Slicer can now link with the Teem libraries, and the command-line tools are accessible from Slicer's "tkcon" window.
* 3x3 tensor eigensolutions in Slicer are now based on Teem.
* A Slicer GUI was built around Teem's tractography method to permit detailed comparison and cross-validation with Slicer's existing tractography method.
* The [[Training:NIH_Workshop_2006|April 2006 Training Workshop at NIH]] included a section on using the "unu" and "tend" command-line tools to help import DWI and DTI into slicer.

'''Key Investigators:'''

* BWH: Gordon Kindlmann, Steve Pieper, Raul San Jose

'''Links:'''

* [[TeemSummary|Teem Summary]]
* [[NAMIC_Wiki:DTI:Nrrd_format|NRRD format for DWI and DTI]]
* [[AHM_2006:AHM_2006|January 2006: Second All-Hands-Meeting]]<nowiki>: </nowiki>[[NAMIC_Wiki:DTI:TeemExamples|Examples of using Teem for DWI processing]]
* [[Training:NIH_Workshop_2006|April 2006: Training Workshop at NIH]]<nowiki>: </nowiki>[[Media:NRRDTrainingV1.0.ppt| PPT on converting DTI data into Nrrd]]
* [[NA-MIC/Projects/Diffusion_Image_Analysis/Diffusion_measures_alongs_fiber_tracts_of_the_cingulum_bundle|Diffusion measures alongs fiber tracts of the cingulum bundle]] : Used Teem for tractography

@@ Line 1: / Line 1: @@
   Back to [[NA-MIC_Collaborations|NA-MIC_Collaborations]]
-'''Objective:'''
+= Name of Template project goes here =
-* Extend the power of Slicer3 by integrating the Teem libraries and command-line tools (e.g. "unu").
+Our objective is to extend the power of Slicer3 by integrating the Teem libraries and command-line tools (e.g. "unu").
-'''Progress:'''
+= Description =
 * Teem has been under active development since 1998, and was partially funded by [[NAC|NAC]], a collaborating project, in 2004-2006. The Teem training and dissemination efforts have leveraged the infrastructure setup by NA-MIC.
@@ Line 17: / Line 17: @@
 * Teem has been ported to the Slicer3 infrastructure and is being used as part of the Slicer3 DTI effort through the vtkTeem library, which support use of Teem I/O libraries (nrrd) and also numerical support for filtering, tractography, and analysis.
-'''Key Investigators:'''
+= Key Investigators =
 * BWH: Gordon Kindlmann, Steve Pieper, Raul San Jose
-'''Links:'''
+= Links =
 * [[TeemSummary|Teem Summary]]

@@ Line 14: / Line 14: @@
 * A Slicer GUI was built around Teem's tractography method to permit detailed comparison and cross-validation with Slicer's existing tractography method.
 * The [[Training:NIH_Workshop_2006|April 2006 Training Workshop at NIH]] included a section on using the "unu" and "tend" command-line tools to help import DWI and DTI into slicer.
 '''Key Investigators:'''
@@ Line 25: / Line 27: @@
 * [[AHM_2006:AHM_2006|January 2006: Second All-Hands-Meeting]]<nowiki>: </nowiki>[[NAMIC_Wiki:DTI:TeemExamples|Examples of using Teem for DWI processing]]
 * [[Training:NIH_Workshop_2006|April 2006: Training Workshop at NIH]]<nowiki>: </nowiki>[[Media:NRRDTrainingV1.0.ppt| PPT on converting DTI data into Nrrd]]
-* [[NA-MIC/Projects/Diffusion_Image_Analysis/Diffusion_measures_alongs_fiber_tracts_of_the_cingulum_bundle|Diffusion measures alongs fiber tracts of the cingulum bundle]] : Used Teem for tractography
+* [[NA-MIC/Projects/Diffusion_Image_Analysis/Diffusion_measures_alongs_fiber_tracts_of_the_cingulum_bundle|Diffusion measures alongs fiber tracts of the cingulum bundle]] : Used Teem for tractography