NA-MIC/Projects/Theme/Template - Revision history

Marianna at 20:30, 10 February 2016

2016-02-10T20:30:54Z

Marianna at 20:55, 1 April 2009

2009-04-01T20:55:06Z

Marianna at 20:50, 1 April 2009

2009-04-01T20:50:14Z

Marianna at 16:04, 1 April 2009

2009-04-01T16:04:59Z

Marianna: /* References */

2009-04-01T15:54:08Z

References

Marianna at 15:40, 1 April 2009

2009-04-01T15:40:40Z

Tkapur at 14:32, 25 March 2009

2009-03-25T14:32:24Z

Tkapur at 03:24, 3 February 2009

2009-02-03T03:24:51Z

Tkapur at 03:24, 3 February 2009

2009-02-03T03:24:32Z

Tkapur at 15:40, 12 May 2008

2008-05-12T15:40:17Z

@@ Line 1: / Line 1: @@
 __NOTOC__
 <gallery>
-Image:PW2009-v3.png|[[2009_Summer_Project_Week|Project Week Main Page]]
+Image:PW-MIT2016.png|[[2016_Winter_Project_Week|Project Week Main Page]]
 </gallery>
@@ Line 14: / Line 12: @@
 ==Key Investigators==
-* UNC: Isabelle Corouge, Casey Goodlett, Guido Gerig
-* Utah: Tom Fletcher, Ross Whitaker
 <div style="margin: 20px;">
@@ Line 21: / Line 19: @@
 <h3>Objective</h3>
 </div>
@@ Line 28: / Line 25: @@
 <h3>Approach, Plan</h3>
 </div>
@@ Line 36: / Line 31: @@
 <h3>Progress</h3>
 </div>
@@ Line 43: / Line 37: @@
 ==References==
-*Fletcher P, Tao R, Jeong W, Whitaker R. [http://www.na-mic.org/publications/item/view/634 A volumetric approach to quantifying region-to-region white matter connectivity in diffusion tensor MRI.] Inf Process Med Imaging. 2007;20:346-358. PMID: 17633712.
-* Corouge I, Fletcher P, Joshi S, Gouttard S, Gerig G. [http://www.na-mic.org/publications/item/view/292 Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.] Med Image Anal. 2006 Oct;10(5):786-98. PMID: 16926104.
-* Corouge I, Fletcher P, Joshi S, Gilmore J, Gerig G. [http://www.na-mic.org/publications/item/view/1122 Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.] Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 1):131-9. PMID: 16685838.

@@ Line 1: / Line 1: @@
 <gallery>
 Image:PW2009-v3.png|[[2009_Summer_Project_Week|Project Week Main Page]]
@@ Line 5: / Line 6: @@
 </gallery>
 ==Instructions for Use of this Template==
 #Please create a new wiki page with an appropriate title for your project using the convention Project/<Project Name>
@@ Line 18: / Line 18: @@
 <div style="margin: 20px;">
 <div style="width: 27%; float: left; padding-right: 3%;">

@@ Line 1: / Line 1: @@
 <gallery>
-Image:NAMIC-MIT-2009.png|[[2009_Summer_Project_Week|Project Week Main Page]]
+Image:PW2009-v3.png|[[2009_Summer_Project_Week|Project Week Main Page]]
 Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus callosum of a normal brain.
 Image:genuFA.jpg|Regression of FA data; solid line represents the mean and dotted lines the standard deviation.
 </gallery>
 __NOTOC__
 ==Instructions for Use of this Template==

@@ Line 20: / Line 20: @@
 <div style="width: 27%; float: left; padding-right: 3%;">
-===Objective===
+<h3>Objective</h3>
 We are developing methods for analyzing diffusion tensor data along fiber tracts. The goal is to be able to make statistical group comparisons with fiber tracts as a common reference frame for comparison.
@@ Line 27: / Line 27: @@
 <div style="width: 27%; float: left; padding-right: 3%;">
-===Approach, Plan===
+<h3>Approach, Plan</h3>
 Our approach for analyzing diffusion tensors is summarized in the IPMI 2007 reference below.  The main challenge to this approach is <foo>.
@@ Line 35: / Line 35: @@
 <div style="width: 40%; float: left;">
-===Progress===
+<h3>Progress</h3>
 Software for the fiber tracking and statistical analysis along the tracts has been implemented. The statistical methods for diffusion tensors are implemented as ITK code as part of the [[NA-MIC/Projects/Diffusion_Image_Analysis/DTI_Software_and_Algorithm_Infrastructure|DTI Software Infrastructure]] project. The methods have been validated on a repeated scan of a healthy individual. This work has been published as a conference paper (MICCAI 2005) and a journal version (MEDIA 2006). Our recent IPMI 2007 paper includes a nonparametric regression method for analyzing data along a fiber tract.

@@ Line 43: / Line 43: @@
 ==References==
-* Fletcher, P.T., Tao, R., Jeong, W.-K., Whitaker, R.T., "A Volumetric Approach to Quantifying Region-to-Region White Matter Connectivity in Diffusion Tensor MRI," to appear Information Processing in Medical Imaging (IPMI) 2007.
+*Fletcher P, Tao R, Jeong W, Whitaker R. [http://www.na-mic.org/publications/item/view/634 A volumetric approach to quantifying region-to-region white matter connectivity in diffusion tensor MRI.] Inf Process Med Imaging. 2007;20:346-358. PMID: 17633712.
-* Corouge, I., Fletcher, P.T., Joshi, S., Gilmore, J.H., and Gerig, G., "Fiber Tract-Oriented Statistics for Quantitative Diffusion Tensor MRI Analysis," Medical Image Analysis 10 (2006), 786--798.
+* Corouge I, Fletcher P, Joshi S, Gouttard S, Gerig G. [http://www.na-mic.org/publications/item/view/292 Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.] Med Image Anal. 2006 Oct;10(5):786-98. PMID: 16926104.
-* Corouge, I., Fletcher, P.T., Joshi, S., Gilmore J.H., and Gerig, G., Fiber Tract-Oriented Statistics for Quantitative Diffusion Tensor MRI Analysis, Lecture Notes in Computer Science LNCS, James S. Duncan and Guido Gerig, editors, Springer Verlag, Vol. 3749, Oct. 2005, pp. 131 -- 138
+* Corouge I, Fletcher P, Joshi S, Gilmore J, Gerig G. [http://www.na-mic.org/publications/item/view/1122 Fiber tract-oriented statistics for quantitative diffusion tensor MRI analysis.] Int Conf Med Image Comput Comput Assist Interv. 2005;8(Pt 1):131-9. PMID: 16685838.
-* C. Goodlett, I. Corouge, M. Jomier, and G. Gerig, A Quantitative DTI Fiber Tract Analysis Suite, The Insight Journal, vol. ISC/NAMIC/ MICCAI Workshop on Open-Source Software, 2005, Online publication: http://hdl.handle.net/1926/39 .
+* Goodlett C, Corouge I, Jomier M, Gerig G, A Quantitative DTI Fiber Tract Analysis Suite, The Insight Journal, vol. ISC/NAMIC/ MICCAI Workshop on Open-Source Software, 2005, Online publication: http://hdl.handle.net/1926/39 .

@@ Line 9: / Line 9: @@
 ===Instructions for Use of this Template===
-#Please create a new wiki page with an appropriate title for your project using the convention NA-MIC/Projects/Theme-Name/Project-Name
+#Please create a new wiki page with an appropriate title for your project using the convention Project/<Project Name>
 #Copy the entire text of this page into the page created above
 #Link the created page into the list of projects for the project event

@@ Line 1: / Line 1: @@
 {|
-|[[Image:NAMIC-MIT-2009.png|thumb|320px|Return to [[2008_Summer_Project_Week|Project Week Main Page]] ]]
+|[[Image:NAMIC-MIT-2009.png|thumb|320px|Return to [[2009_Summer_Project_Week|Project Week Main Page]] ]]
 |[[Image:genuFAp.jpg|thumb|320px|Scatter plot of the original FA data through the genu of the corpus callosum of a normal brain.]]
 |[[Image:genuFA.jpg|thumb|320px|Regression of FA data; solid line represents the mean and dotted lines the standard deviation.]]