NA-MIC Brains Collaboration - Revision history

Marianna at 16:57, 14 December 2016

2016-12-14T16:57:17Z

2009-12-16T19:10:46Z

2009-12-02T15:11:27Z

Publications

2009-12-01T18:03:11Z

Key Personnel

2009-11-30T19:51:10Z

2009-11-24T22:44:05Z

2009-11-24T22:30:49Z

2008-12-10T23:14:49Z

Tools Developed

2008-12-10T21:39:30Z

Validation of Pipeline Using MIND MCIC Sample

2008-12-10T21:39:12Z

Tools Developed

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 ==Publications==
-*Powell S, Magnotta V, Johnson H, Jammalamadaka V, Pierson R, Andreasen N. [http://www.na-mic.org/publications/item/view/1755 Registration and machine learning-based automated segmentation of subcortical and cerebellar brain structures.] Neuroimage. 2008 Jan 1;39(1):238-47. PMID: 17904870. PMCID: PMC2253948.
+*Powell S., Magnotta V.A., Johnson H., Jammalamadaka V.K., Pierson R., Andreasen N.C. [http://www.na-mic.org/publications/item/view/1755 Registration and machine learning-based automated segmentation of subcortical and cerebellar brain structures.] Neuroimage. 2008 Jan 1;39(1):238-47. PMID: 17904870. PMCID: PMC2253948.
 ==Meetings==
 ==Resource Links==

← Older revision		Revision as of 19:10, 16 December 2009
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−	Back to [[NA-MIC_External_Collaborations]]	+	__NOTOC__
		+	Back to [[NA-MIC_External_Collaborations\|NA-MIC External Collaborations]]

	==Abstract==		==Abstract==

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 ==Publications==
-# Powell S, Magnotta VA, Johnson H, Jammalamadaka VK, Pierson R, Andreasen NC. Registration and machine learning-based automated segmentation of subcortical and cerebellar brain structures.  Neuroimage. 2008 Jan 1;39(1):238-47.
+*Powell S, Magnotta V, Johnson H, Jammalamadaka V, Pierson R, Andreasen N. [http://www.na-mic.org/publications/item/view/1755 Registration and machine learning-based automated segmentation of subcortical and cerebellar brain structures.] Neuroimage. 2008 Jan 1;39(1):238-47. PMID: 17904870. PMCID: PMC2253948.
 ==Meetings==
 ==Resource Links==

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 ==Key Personnel==
-University of Iowa: Vincent Magnotta, PI, Hans Johnson, Jeremy Bockholt, and Nancy Andreasen
+*University of Iowa: Vincent Magnotta, PI, Hans Johnson, Jeremy Bockholt, and Nancy Andreasen
-NA-MIC: Steve Pieper (Isomics)
+*NA-MIC: Steve Pieper (Isomics)
 ==Funding Duration==

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 This project is not an NCBC collaboration grant, but instead a Continued Development and Maintenance of Software grant. The intent of this application is to update the '''BRAINS''' image analysis software developed at the University of Iowa.
-==Grant #==
+==Grant#==
 R01NS050568
 ==Key Personnel==
-University of Iowa: Vincent Magnotta, PI, Hans Johnson, Jeremy Bockholt, and Nancy Andreasen.
+University of Iowa: Vincent Magnotta, PI, Hans Johnson, Jeremy Bockholt, and Nancy Andreasen
-NA-MIC: Steve Pieper
+NA-MIC: Steve Pieper (Isomics)
 ==Funding Duration==

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 *[[Evaluate of DTI Reliability Across Sites and Platforms]]
 ===Tools Developed===
 Here is a list of tools that are being developed as part of this project. A number of these tools have been contributed to the NITRC website. All of the tools are built upon the Slicer3 execution model and therefore will readily plug-in to Slicer3.
 *[[BRAINSFit]] - Linear fitting of two 3D image sets using a mutual information similarity metric. [http://www.nitrc.org/projects/multimodereg/ NITRC Link]

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-=== Validation of Pipeline Using MIND MCIC Sample ===
+=== Validation of Pipeline ===
 *[[Evaluate MIND MCIC Human Phantom Sample Using Automated Pipeline]]
 *[[Evaluate of DTI Reliability Across Sites and Platforms]]

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 *[[BRAINSTracer]] - Tracing tool that uses thge vtkContourWidget for defining a region of interest manually. [http://www.nitrc.org/projects/brainstracer/ NITRC Link]
 *[[GTRACT]] - Diffusion tensor analysis and Fiber tracking tool. [http://www.nitrc.org/projects/vmagnotta/ NITRC Link]
-*[[BRAINS Auto Workup]] - Fully automated image analysis pipeline for generation of volumetric measurements. [http://www.nitrc.org/projects/brains/ NITRC Link]
+*[[BRAINS Automated Pipeline]] - Fully automated image analysis pipeline for generation of volumetric measurements. [http://www.nitrc.org/projects/brains/ NITRC Link]
 === BRAINS Features ===