NA-MIC NCBC Collaboration:Automated FE Mesh Development - Revision history

Grundlett: Text replacement - "[http://www.na-mic.org/Wiki/images/" to "[https://na-mic.org/w/images/"

2017-07-10T18:27:02Z

Text replacement - "[http://www.na-mic.org/Wiki/images/" to "[https://na-mic.org/w/images/"

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2017-07-10T18:07:35Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

Marianna: /* Publications */

2016-12-13T21:10:34Z

Publications

Tkapur: /* Projects */

2012-11-07T20:22:49Z

Projects

Tkapur: /* Grant# */

2011-03-21T14:03:33Z

Grant#

Clisle: /* Slicer3 Meshing Tutorial */

2010-10-08T14:15:40Z

Slicer3 Meshing Tutorial

Clisle: /* Slicer3 Integration */

2010-10-08T14:14:06Z

Slicer3 Integration

Clisle: /* Funding Duration */

2010-10-08T14:11:27Z

Funding Duration

Marianna: /* Publications */

2010-05-14T14:37:00Z

Publications

Marianna: /* Resource Links */

2010-05-14T14:34:56Z

Resource Links

@@ Line 81: / Line 81: @@
 *'''2007'''
 **'''NA-MIC AHM'''
-***[http://www.na-mic.org/Wiki/images/4/40/NA-MIC_Mesh_Collaboration.ppt NA-MIC All Hands Meeting Update 2007]
+***[https://na-mic.org/w/images/4/40/NA-MIC_Mesh_Collaboration.ppt NA-MIC All Hands Meeting Update 2007]
 ***[[2007 Project Half Week]]
 **'''American Society of Biomechanics 2007'''
@@ Line 93: / Line 93: @@
 *'''2008'''
 **'''NA-MIC AHM'''
-***[http://www.na-mic.org/Wiki/images/2/23/NA-MIC_Mesh_Collaboration_-_2008.ppt NA-MIC All Hands Meeting Update]
+***[https://na-mic.org/w/images/2/23/NA-MIC_Mesh_Collaboration_-_2008.ppt NA-MIC All Hands Meeting Update]
 ***[[2008 Winter Project Week:Finite Element Meshing into NA-MIC]]
 **'''Annual BMES Meeting'''
@@ Line 109: / Line 109: @@
 *'''2009'''
 **'''NA-MIC All Hands Meeting'''
-***[http://www.na-mic.org/Wiki/images/d/d7/NA-MIC_Mesh_Collaboration_2009.ppt AHM Update]
+***[https://na-mic.org/w/images/d/d7/NA-MIC_Mesh_Collaboration_2009.ppt AHM Update]
 ***[[Iowa Meshing Tutorial]]
 **'''ASME Summer Bioengineering Conference - 2008 - Marco Island, FL.'''
@@ Line 125: / Line 125: @@
 *'''2010'''
-**[http://www.na-mic.org/Wiki/images/4/44/NA-MIC-Mesh-Collaboration-2010.ppt NA-MIC Update 2010]
+**[https://na-mic.org/w/images/4/44/NA-MIC-Mesh-Collaboration-2010.ppt NA-MIC Update 2010]
 **'''Pre ORS'''
 ***Ramme AJ, Shivanna KH, Magnotta VA, Grosland NM.  Semi-Automated Block Definitions in Multi-Block Finite Element Meshing. 18th Annual Symposium on Computational Methods in Orthopaedic Biomechanics. Tulane University; New Orleans, LA, March 5, 2010.

@@ Line 47: / Line 47: @@
 === Slicer3 Integration ===
-# [http://www.slicer.org/slicerWiki/index.php/Slicer_Interactive_Module Slicer Interactive Module]
+# [https://www.slicer.org/wiki/Slicer_Interactive_Module Slicer Interactive Module]
 # [[Mesh KWWidgets Interface]]
 # [[Slicer3 Mesh Meeting October 2008]]

@@ Line 58: / Line 58: @@
 ==Publications==
 #Tadepalli SC, Shivanna KH, Magnotta VA, Kallemeyn NA, Grosland NM, [http://www.hindawi.com/journals/asp/2010/190293.html Toward the development of virtual surgical tools to aid orthopaedic FE analyses]  EURASIP Journal on Advances in Signal Processing, 2009, vol. 2010.
-#Devries NA, Shivanna KH, Tadepalli SC, Magnotta VA, Grosland NM. [http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2723692/pdf/iowa0029-0048.pdf Ia-FEMesh: anatomic fe models - a check of mesh accuracy and validity]. Iowa Orthop J. 29:48-54, 2009.
+#DeVries N.A., Shivanna K.H., Tadepalli S.C., Magnotta V.A., Grosland N.M. [http://www.na-mic.org/publications/item/view/1790 IA-FEMesh: Anatomic Fe Models - A Check of Mesh Accuracy and Validity]. Iowa Orthop J. 2009 Jan;29:48-54. PMID: 19742085. PMCID: PMC2723692.
-#Kallemeyn NA, Tadepalli SC, Shivanna KH, Grosland NM. [http://www.cmpbjournal.com/article/S0169-2607%2809%2900095-9/abstract An interactive multiblock approach to meshing the spine]. Comput Methods Programs Biomed. 2009;95(3):227-35.
+#Kallemeyn N.A., Tadepalli S.C., Shivanna K.H., Grosland N.M.  [http://www.na-mic.org/publications/item/view/1791 AAn Interactive Multiblock Approach to Meshing the Spine]. Comput Methods Programs Biomed. Comput Methods Programs Biomed. 2009 Sep;95(3):227-35. PMID: 19394107.
-#Grosland NM, Shivanna KH, Magnotta VA, Kallemeyn NA, DeVries NA, Tadepalli SC, Lisle C. [http://www.cmpbjournal.com/article/S0169-2607(08)00264-2/abstract IA-FEMesh: an open-source, interactive, multiblock approach to anatomic finite element model development]. Comput Methods Programs Biomed. 2009;94(1):96-107.
+#Grosland N.M., Shivanna K.H., Magnotta V.A., Kallemeyn N.A., DeVries N.A., Tadepalli S.C., Lisle C.  http://www.na-mic.org/publications/item/view/1794 IA-FEMesh: An Open-source, Interactive, Multiblock Approach to Anatomic Finite Element Model Development. Comput Methods Programs Biomed.]. Comput Methods Programs Biomed. 2009 Apr;94(1):96-107. PMID: 19157630. PMCID: PMC2712294.
-#Ramme AJ, Devries N, Kallemyn NA, Magnotta VA, Grosland NM. [http://www.springerlink.com/content/h972u63630311g78/ Semi-automated Phalanx Bone Segmentation Using the Expectation Maximization Algorithm]. J Digit Imaging. 2008.
+#Ramme AJ, Devries N, Kallemyn NA, Magnotta VA, Grosland NM. [http://www.na-mic.org/publications/item/view/1793 Semi-automated Phalanx Bone Segmentation using the Expectation Maximization Algorithm]. J Digit Imaging. 2009 Oct;22(5):483-91. PMID: 18769967. PMCID: PMC2745490.
-#Grosland NM, Bafna R, Magnotta VA. [http://www.informaworld.com/smpp/content~db=all?content=10.1080/10255840802136143 Automated hexahedral meshing of anatomic structures using deformable registration]. Comput Methods Biomech Biomed Engin. 2009;12(1):35-43.
+#Grosland NM, Bafna R, Magnotta VA. [http://www.na-mic.org/publications/item/view/1792 Automated Hexahedral Meshing of Anatomic Structures using Deformable Registration]. Comput Methods Biomech Biomed Engin. 2009;12(1):35-43.
-#DeVries NA, Gassman EE, Kallemeyn NA, Shivanna KH, Magnotta VA, Grosland NM. [http://www.springerlink.com/content/u36v5957k17536wt/ Validation of phalanx bone three-dimensional surface segmentation from computed tomography images using laser scanning]. Skeletal Radiol. 2008;37(1):35-42.
+#DeVries NA, Gassman EE, Kallemeyn NA, Shivanna KH, Magnotta VA, Grosland NM. [http://www.na-mic.org/publications/item/view/1788 Validation of Phalanx Bone Three-dimensional Surface Segmentation from Computed Tomography Images using Laser Scanning]. Skeletal Radiol. 2008 Jan;37(1):35-42. PMID: 17962937.
-#Gassman EE, Powell SM, Kallemeyn NA, Devries NA, Shivanna KH, Magnotta VA, Ramme AJ, Adams BD, Grosland NM. [http://www.springerlink.com/content/b15376vwx00v5088/ Automated bony region identification using artificial neural networks: reliability and validation measurements]. Skeletal Radiol. 2008;37(4):313-9.
+#Gassman EE, Powell SM, Kallemeyn NA, Devries NA, Shivanna KH, Magnotta VA, Ramme AJ, Adams BD, Grosland NM. [http://www.na-mic.org/publications/item/view/1789 Automated Bony Region Identification using Artificial Neural Networks: Reliability and Validation Measurements]. Skeletal Radiol. 2008 Apr;37(4):313-9. PMID: 18172639.
-#Magnotta V, Li W, Grosland N. [http://hdl.handle.net/10380/1490 Comparison of Displacement-Based and Force-Based Mapped Meshing]. Workshop on Computational Biomechanics for Medicine at MICCAI 2008. Insight Journal, http://hdl.handle.net/10380/1490 , 2008.
+#Magnotta V, Li W, Grosland N. [http://www.na-mic.org/publications/item/view/1795 Comparison of Displacement-Based and Force-Based Mapped Meshing]. Int Conf Med Image Comput Comput Assist Interv. 2008 Sep;11(WS). Workshop on Computational Biomechanics for Medicine.
 #Shivanna K, Kallemeyn N, Tadepalli S, DeVries N, Magnotta V, Grosland N. [http://www.x-cd.com/sbc08/pdfs/192782.pdf Ia-FeMesh: An Interactive All Hexahedral Mesh Generator For Discrete Anatomic Closed Surfaces]. Proceedings of the 2008 Summer Bioengineering Conference, 2008.
-#Grosland NM, Lisle C, Shivanna KH, Pieper S, Magnotta VA. [http://www.asbweb.org/conferences/2007/40.pdf A Check Of Mesh Quality], American Society Of Biomechanics, August 22-27, 2007.
+#Grosland NM, Lisle C, Shivanna KH, Pieper S, Magnotta VA. [http://www.asbweb.org/conferences/2007/40.pdf A Check Of Mesh Quality], American Society of Biomechanics, August 22-27, 2007.
-#Pébay PP, Thompson D, Shepherd J, Knupp P, Lisle C, Magnotta VA, Grosland NM. [http://www.springerlink.com/content/r40715v33h024nl8/ New Applications of the Verdict Library for Standardized Mesh Verification Pre, Post, and End-to-End Processing], Proceedings of the 16th International Meshing Roundtable, 2007.
+#Pébay PP, Thompson D, Shepherd J, Knupp P, Lisle C, Magnotta VA, Grosland NM. [http://www.na-mic.org/publications/item/view/1796 New Applications of the Verdict Library for Standardized Mesh Verification Pre, Post, and End-to-End Processing], Proceedings of the 16th International Meshing Roundtable, 2007.
 #Shivanna KH, Adams BD, Magnotta VA, Grosland NM. [http://cbm2006.mech.uwa.edu.au/CBM_2006.pdf Towards Automating Patient-Specific Finite Element Model Development]. Proceedings Computational Biomechanics For Medicine, 2006.

← Older revision		Revision as of 20:22, 7 November 2012
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	==Projects==		==Projects==
−	An initial version of the meshing tool was recently released as a standalone application called [http://www.ccad.uiowa.edu/~~mimx~~/IA-FEMesh/ IA-FEMesh]. This application is built completely on NA-MIC tools including ITK, VTK, and KWWidgets.	+	An initial version of the meshing tool was recently released as a standalone application called [http://www.ccad.uiowa.edu/MIMX/projects/IA-FEMesh IA-FEMesh]. This application is built completely on NA-MIC tools including ITK, VTK, and KWWidgets.

@@ Line 6: / Line 6: @@
 ==Grant#==
-R01EB005973
+[http://projectreporter.nih.gov/project_info_description.cfm?aid=7170164&icde=7475465 R01EB005973]
 ==Key Personnel==

@@ Line 54: / Line 54: @@
 === Slicer3 Meshing Tutorial ===
 #[[Iowa Meshing Tutorial]] - Tutorial showing how to mesh the proximal phalanx bone with an example dataset
 ==Publications==

@@ Line 13: / Line 13: @@
 ==Funding Duration==
-/20/2006-06/30/2010
+/20/2006-06/30/2011
 ==Projects==
 An initial version of the meshing tool was recently released as a standalone application called [http://www.ccad.uiowa.edu/mimx/IA-FEMesh/ IA-FEMesh]. This application is built completely on NA-MIC tools including ITK, VTK, and KWWidgets.

← Older revision		Revision as of 14:34, 14 May 2010
Line 138:		Line 138:

	* Mesh warping project at the SPL - Steve Haker:		* Mesh warping project at the SPL - Steve Haker:
−	** Haker S, Warfield S, Tempany C. ~~[http://www~~.~~na-mic.org/Special:PubDB_View?dspaceid=633~~ Landmark-Guided Surface Matching and Volumetric Warping for Improved Prostate Biopsy Targeting and Guidance.~~] Proceedings of the 7th International Conference on Medical~~ Image ~~Computing and Computer-Assisted Intervention, MICCAI~~ 2004~~, LNCS 3217, pp.~~ 267-275~~, 2004~~.	+	** Haker S., Warfield S.K., Tempany C.M. Landmark-Guided Surface Matching and Volumetric Warping for Improved Prostate Biopsy Targeting and Guidance.Int Conf Med Image Comput Comput Assist Interv. 2004;7(Pt 2):267-275.