NA-MIC VMTK Collaboration - Revision history

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2017-07-10T18:07:26Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

Haehn: /* References */

2010-06-24T14:07:58Z

References

Haehn: /* Current Progress */

2010-06-24T14:07:04Z

Current Progress

Haehn: /* Current Progress */

2010-01-11T16:08:38Z

Current Progress

Haehn: /* References */

2010-01-11T16:00:32Z

References

Marianna at 19:44, 16 December 2009

2009-12-16T19:44:45Z

Marianna: /* Citations */

2009-12-02T15:47:12Z

Citations

Marianna: /* Citations */

2009-12-02T15:45:47Z

Citations

Marianna at 20:30, 30 November 2009

2009-11-30T20:30:37Z

Marianna at 20:29, 30 November 2009

2009-11-30T20:29:52Z

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 ==Current Progress==
 * vmtk script for automated conversion of vmtk command line pipes to Slicer command-line modules (DONE)
-* Implementation of vmtk-based interactive modules, available at [http://www.vmtk.org/Main/VmtkIn3DSlicer the VMTK in 3D Slicer project page]. Documentation is available at the Slicer wiki [http://www.slicer.org/slicerWiki/index.php/Modules:VMTKLevelSetSegmentation here].
+* Implementation of vmtk-based interactive modules, available at [http://www.vmtk.org/Main/VmtkIn3DSlicer the VMTK in 3D Slicer project page]. Documentation is available at the Slicer wiki [https://www.slicer.org/wiki/Modules:VMTKLevelSetSegmentation here].
 * NEW TUTORIAL AVAILABLE: [[AHM_2010_Tutorial_Contest_-_CoronaryArteriesCenterlinesVMTK|Centerline Extraction of Coronary Arteries in 3D Slicer using VMTK based Tools]]
 * New extensions available: VMTKNetworkExtraction (Documentation to come..)

← Older revision		Revision as of 14:07, 24 June 2010
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	[[2010_Winter_Project_Week_The_Vascular_Modeling_Toolkit_in_3D_Slicer\|2010 Winter Project Week]]		[[2010_Winter_Project_Week_The_Vascular_Modeling_Toolkit_in_3D_Slicer\|2010 Winter Project Week]]
		+
		+	[[2010_Summer_Project_Week/The_Vascular_Modeling_Toolkit_in_3D_Slicer\|2010 Summer Project Week]]

	==Citations ==		==Citations ==

@@ Line 19: / Line 19: @@
 * Implementation of vmtk-based interactive modules, available at [http://www.vmtk.org/Main/VmtkIn3DSlicer the VMTK in 3D Slicer project page]. Documentation is available at the Slicer wiki [http://www.slicer.org/slicerWiki/index.php/Modules:VMTKLevelSetSegmentation here].
 * NEW TUTORIAL AVAILABLE: [[AHM_2010_Tutorial_Contest_-_CoronaryArteriesCenterlinesVMTK|Centerline Extraction of Coronary Arteries in 3D Slicer using VMTK based Tools]]
 ==References==

@@ Line 18: / Line 18: @@
 * vmtk script for automated conversion of vmtk command line pipes to Slicer command-line modules (DONE)
 * Implementation of vmtk-based interactive modules, available at [http://www.vmtk.org/Main/VmtkIn3DSlicer the VMTK in 3D Slicer project page]. Documentation is available at the Slicer wiki [http://www.slicer.org/slicerWiki/index.php/Modules:VMTKLevelSetSegmentation here].
 ==References==

← Older revision		Revision as of 16:00, 11 January 2010
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	[[Summer2009:The_Vascular_Modeling_Toolkit_in_3D_Slicer \| 2009 Summer Project Week]]		[[Summer2009:The_Vascular_Modeling_Toolkit_in_3D_Slicer \| 2009 Summer Project Week]]
		+
		+	[[2010_Winter_Project_Week_The_Vascular_Modeling_Toolkit_in_3D_Slicer\|2010 Winter Project Week]]

	==Citations ==		==Citations ==

← Older revision		Revision as of 19:44, 16 December 2009
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		+	Back to [[NA-MIC_External_Collaborations\|NA-MIC External Collaborations]]
		+	__NOTOC__
	Collaboration with [http://villacamozzi.marionegri.it/~luca/ Luca Antiga] of the [http://www.marionegri.it Mario Negri Institute].		Collaboration with [http://villacamozzi.marionegri.it/~luca/ Luca Antiga] of the [http://www.marionegri.it Mario Negri Institute].
−
−	~~Back to [[NA-MIC_External_Collaborations]]~~

	[[Image:VmtkSlicerModule.jpg]]		[[Image:VmtkSlicerModule.jpg]]

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 * Lee SW, Antiga L, Spence JD and Steinman DA. Geometry of the carotid bifurcation predicts its exposure to disturbed flow. Stroke. 2008 Aug;39(8):2341-7. PMID: 18556585. Featured on the front cover.
 * Thomas JB, Antiga L, Che S, Milner JS, Hangan Steinman DA, Spence JD, Rutt BK and Steinman DA. Variation in the carotid bifurcation geometry of young vs. older adults: Implications for "geometric risk" of atherosclerosis. Stroke. 2005 Nov;36(11):2450-6. PMID: 16224089.
-* Antiga L, Steinman DA. Robust and objective decomposition and mapping of bifurcating vessels. IEEE Trans Med Imaging. 2004 Jun;23(6):704-13.
+* Antiga L, Steinman DA. Robust and objective decomposition and mapping of bifurcating vessels. IEEE Trans Med Imaging. 2004 Jun;23(6):704-13. PMID: 15191145.
 * Antiga L, Ene-Iordache B and Remuzzi A. Computational geometry for patient-specific reconstruction and meshing of blood vessels from MR and CT angiography. EEE Trans Med Imaging. 2003 May;22(5):674-84. PMID: 12846436.

@@ Line 35: / Line 35: @@
 ==Citations ==
-* Piccinelli M, Veneziani A, Steinman DA, Remuzzi A, Antiga L (2009) A framework for geometric analysis of vascular structures: applications to cerebral aneurysms. IEEE Trans Med Imaging. In press.
+* Piccinelli M, Veneziani A, Steinman DA, Remuzzi A, Antiga L (2009) A framework for geometric analysis of vascular structures: applications to cerebral aneurysms. IEEE Trans Med Imaging. 2009 Aug;28(8):1141-55. PMID: 19447701.
-* Antiga L, Piccinelli M, Botti L, Ene-Iordache B, Remuzzi A and Steinman DA. An image-based modeling framework for patient-specific computational hemodynamics. Medical and Biological Engineering and Computing, 46: 1097-1112, Nov 2008.
+* Antiga L, Piccinelli M, Botti L, Ene-Iordache B, Remuzzi A and Steinman DA. An image-based modeling framework for patient-specific computational hemodynamics. Med Biol Eng Comput. 2008 Nov;46(11):1097-112. PMID: 19002516.
-* Lee SW, Antiga L, Spence JD and Steinman DA. Geometry of the carotid bifurcation predicts its exposure to disturbed flow. Stroke, 39(8): 2341-2347, Aug 2008. Featured on the front cover.
+* Lee SW, Antiga L, Spence JD and Steinman DA. Geometry of the carotid bifurcation predicts its exposure to disturbed flow. Stroke. 2008 Aug;39(8):2341-7. PMID: 18556585. Featured on the front cover.
-* Thomas JB, Antiga L, Che S, Milner JS, Hangan Steinman DA, Spence JD, Rutt BK and Steinman DA. Variation in the carotid bifurcation geometry of young vs. older adults: Implications for "geometric risk" of atherosclerosis. Stroke, 36(11): 2450-2456, Nov 2005.
+* Thomas JB, Antiga L, Che S, Milner JS, Hangan Steinman DA, Spence JD, Rutt BK and Steinman DA. Variation in the carotid bifurcation geometry of young vs. older adults: Implications for "geometric risk" of atherosclerosis. Stroke. 2005 Nov;36(11):2450-6. PMID: 16224089.
-* Antiga L, Steinman DA. Robust and objective decomposition and mapping of bifurcating vessels. IEEE Transactions on Medical Imaging, 23(6): 704-713, June 2004.
+* Antiga L, Steinman DA. Robust and objective decomposition and mapping of bifurcating vessels. IEEE Trans Med Imaging. 2004 Jun;23(6):704-13.
-* Antiga L, Ene-Iordache B and Remuzzi A. Computational geometry for patient-specific reconstruction and meshing of blood vessels from MR and CT angiography. IEEE Transactions on Medical Imaging, 22(5): 674-684, May 2003.
+PMID: 15191145.

@@ Line 7: / Line 7: @@
 ==Key Personnel==
-*Luca Antiga
+*Mario Negri Institute: Luca Antiga, PI
 *NA-MIC: Ron Kikinis, Steve Pieper

@@ Line 10: / Line 10: @@
 *NA-MIC: Ron Kikinis, Steve Pieper
-===Goals of the Project===
+==Goals of the Project==
 To create a Slicer-based platform for segmentation of vascular segments from angiographic images (CTA, MRA, ...), analysis of vascular geometry, mesh generation and hemodynamic simulation (CFD) and visualization.
 Since many of these functionalities are already provided by the Vascular Modeling Toolkit ([http://www.vmtk.org www.vmtk.org]) as command-line tools, the plan is to integrate vmtk scripts within Slicer as command-line modules for the non-interactive tasks, and to create ad-hoc GUI modules for the more interactive tasks (i.e. segmentation).
-===Current progress===
+==Current Progress==
 * vmtk script for automated conversion of vmtk command line pipes to Slicer command-line modules (DONE)
 * Implementation of vmtk-based interactive modules, available at [http://www.vmtk.org/Main/VmtkIn3DSlicer the VMTK in 3D Slicer project page]. Documentation is available at the Slicer wiki [http://www.slicer.org/slicerWiki/index.php/Modules:VMTKLevelSetSegmentation here].
-=== References ===
+==References==
 [http://www.vmtk.org www.vmtk.org]
@@ Line 33: / Line 33: @@
 [[Summer2009:The_Vascular_Modeling_Toolkit_in_3D_Slicer | 2009 Summer Project Week]]
-=== Citations ===
+==Citations ==
 * Piccinelli M, Veneziani A, Steinman DA, Remuzzi A, Antiga L (2009) A framework for geometric analysis of vascular structures: applications to cerebral aneurysms. IEEE Trans Med Imaging. In press.