Plastimatch in NiPype - Revision history

P.zaffino at 18:00, 6 June 2013

2013-06-06T18:00:36Z

P.zaffino at 17:56, 6 June 2013

2013-06-06T17:56:11Z

P.zaffino at 17:36, 6 June 2013

2013-06-06T17:36:28Z

P.zaffino: Created page with 'NOTOC Image:PW-MIT2013.png|Projects List Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus…'

2013-06-06T17:35:29Z

Created page with '__NOTOC__ <gallery> Image:PW-MIT2013.png|Projects List Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus…'

New page

__NOTOC__
<gallery>
Image:PW-MIT2013.png|[[2013_Summer_Project_Week#Projects|Projects List]]
Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus callosum of a normal brain.
Image:genuFA.jpg|Regression of FA data; solid line represents the mean and dotted lines the standard deviation.
</gallery>

==Key Investigators==
* UNICZ: Paolo Zaffino
* UIowa: Dave Welch, Hans Johnson

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<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Objective</h3>
We want to add in NiPype the possibility to execute a registration using Plastimatch.

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<div style="width: 27%; float: left; padding-right: 3%;">

<h3>Approach, Plan</h3>

Write a Python interface to add the possibility to use Plastimatch in NiPype.

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<div style="width: 40%; float: left;">

<h3>Progress</h3>
TBD.

</div>
</div>

==References==
* Plastimatch 1.6 – Current Capabilities and Future Directions [http://www.spl.harvard.edu/publications/item/view/2371] Int Conf Med Image Comput Comput Assist Interv. 2012;15(WS).
* Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in Python [http://www.frontiersin.org/Neuroinformatics/10.3389/fninf.2011.00013/abstract] Front. Neuroinform., 22 August 2010

@@ Line 14: / Line 14: @@
 Neuroimaging is a wide field of research in which image registration plays a central role.
 NiPype provides a uniform interface to existing neuroimaging software and facilitates interaction between these packages within a single workflow.
-We want to add in NiPype the possibility to execute a registration using Plastimatch, in order to take advantage of Plastimatch capability also for the neuroimage analysis executed using NiPype.
+We want to add in NiPype the possibility to execute registrations using Plastimatch, in order to take advantage of Plastimatch capability also for the neuroimage analysis executed using NiPype.
 </div>

@@ Line 12: / Line 12: @@
 <h3>Objective</h3>
-We want to add in NiPype the possibility to execute a registration using Plastimatch.
+Neuroimaging is a wide field of research in which image registration plays a central role.
+NiPype provides a uniform interface to existing neuroimaging software and facilitates interaction between these packages within a single workflow.
 </div>

@@ Line 2: / Line 2: @@
 <gallery>
 Image:PW-MIT2013.png|[[2013_Summer_Project_Week#Projects|Projects List]]
 </gallery>

Plastimatch in NiPype - Revision history

P.zaffino at 18:00, 6 June 2013

P.zaffino at 17:56, 6 June 2013

P.zaffino at 17:36, 6 June 2013

P.zaffino: Created page with '__NOTOC__ Image:PW-MIT2013.png|Projects List Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus…'

P.zaffino: Created page with 'NOTOC Image:PW-MIT2013.png|Projects List Image:genuFAp.jpg|Scatter plot of the original FA data through the genu of the corpus…'