Projects/Diffusion/Contrasting Tractography Measures/Slicer Tractography - Revision history

Dougm at 18:43, 26 September 2007

2007-09-26T18:43:41Z

Dougm at 18:09, 26 September 2007

2007-09-26T18:09:48Z

Dougm at 15:27, 26 September 2007

2007-09-26T15:27:45Z

Dougm at 15:26, 26 September 2007

2007-09-26T15:26:48Z

Dougm at 13:33, 26 September 2007

2007-09-26T13:33:09Z

Dougm at 13:32, 26 September 2007

2007-09-26T13:32:17Z

Dougm at 13:30, 26 September 2007

2007-09-26T13:30:45Z

Dougm at 19:10, 25 September 2007

2007-09-25T19:10:19Z

Dougm at 19:01, 25 September 2007

2007-09-25T19:01:14Z

Dougm at 18:49, 25 September 2007

2007-09-25T18:49:35Z

← Older revision		Revision as of 18:43, 26 September 2007
Line 48:		Line 48:

	====Results====		====Results====
−
−	~~=====Uncinate=====~~
−	{\|
−	\| [[Image:OUTPUT_unc0.PNG\|200px]] \|\| [[Image:OUTPUT_unc1.PNG\|200px]] \|\| [[Image:OUTPUT_unc2.PNG\|200px]] \|\| [[Image:OUTPUT_unc3.PNG\|200px]] \|\| [[Image:OUTPUT_unc4.PNG\|200px]] \|\| [[Image:OUTPUT_unc5.PNG\|200px]]
−	\|-
−	\| [[Image:OUTPUT_unc6.PNG\|200px]] \|\| [[Image:OUTPUT_unc7.PNG\|200px]] \|\| [[Image:OUTPUT_unc8.PNG\|200px]] \|\| [[Image:OUTPUT_unc9.PNG\|200px]] \|\| [[Image:OUTPUT_unc10.PNG\|200px]] \|\| [[Image:OUTPUT_unc11.PNG\|200px]]
−	\|}
−
−	~~=====Internal Capsule=====~~
−
−	~~[[Media:OUTPUT_IC_stats.xls\|Spreadsheet: Internal Capsule group statistics]]~~
−
−	{\|
−	\| [[Image:OUTPUT_ic0.PNG\|200px]] \|\| [[Image:OUTPUT_ic1.PNG\|200px]] \|\| [[Image:OUTPUT_ic2.PNG\|200px]] \|\| [[Image:OUTPUT_ic3.PNG\|200px]] \|\| [[Image:OUTPUT_ic4.PNG\|200px]] \|\| [[Image:OUTPUT_ic5.PNG\|200px]]
−	\|-
−	\| [[Image:OUTPUT_ic6.PNG\|200px]] \|\| [[Image:OUTPUT_ic7.PNG\|200px]] \|\| [[Image:OUTPUT_ic8.PNG\|200px]] \|\| [[Image:OUTPUT_ic9.PNG\|200px]] \|\| [[Image:OUTPUT_ic10.PNG\|200px]] \|\| [[Image:OUTPUT_ic11.PNG\|200px]]
−	\|}
−	~~=====Fornix=====~~
−
−	{\|
−	\| [[Image:OUTPUT_fx0.PNG\|200px]] \|\| [[Image:OUTPUT_fx1.PNG\|200px]] \|\| [[Image:OUTPUT_fx2.PNG\|200px]] \|\| [[Image:OUTPUT_fx3.PNG\|200px]] \|\| [[Image:OUTPUT_fx4.PNG\|200px]] \|\| [[Image:OUTPUT_fx5.PNG\|200px]]
−	\|-
−	\| [[Image:OUTPUT_fx6.PNG\|200px]] \|\| [[Image:OUTPUT_fx7.PNG\|200px]] \|\| [[Image:OUTPUT_fx8.PNG\|200px]] \|\| [[Image:OUTPUT_fx9.PNG\|200px]] \|\| [[Image:OUTPUT_fx10.PNG\|200px]] \|\| [[Image:OUTPUT_fx11.PNG\|200px]]
−	\|}
−
−
−	~~=====Cingulum=====~~
−
−	~~[[Media:TractMeasures_cingulum.xls\|Spreadsheet: Tract measurements]]~~
−	{\|
−	\| [[Image:OUTPUT_cing0.PNG\|200px]] \|\| [[Image:OUTPUT_cing1.PNG\|200px]] \|\| [[Image:OUTPUT_cing2.PNG\|200px]] \|\| [[Image:OUTPUT_cing3.PNG\|200px]] \|\| [[Image:OUTPUT_cing4.PNG\|200px]] \|\| [[Image:OUTPUT_cing5.PNG\|200px]]
−	\|-
−	\| [[Image:OUTPUT_cing6.PNG\|200px]] \|\| [[Image:OUTPUT_cing7.PNG\|200px]] \|\| [[Image:OUTPUT_cing8.PNG\|200px]] \|\| [[Image:OUTPUT_cing9.PNG\|200px]] \|\| [[Image:OUTPUT_cing10.PNG\|200px]] \|\| [[Image:OUTPUT_cing11.PNG\|200px]]
−	\|}

@@ Line 76: / Line 76: @@
 =====Cingulum=====
 {|
 | [[Image:OUTPUT_cing0.PNG|200px]] || [[Image:OUTPUT_cing1.PNG|200px]] || [[Image:OUTPUT_cing2.PNG|200px]] || [[Image:OUTPUT_cing3.PNG|200px]] || [[Image:OUTPUT_cing4.PNG|200px]] || [[Image:OUTPUT_cing5.PNG|200px]]

@@ Line 58: / Line 58: @@
 =====Internal Capsule=====
-[[Media:OUTPUT_IC_stats.xls|Internal Capsule group statistics]]
+[[Media:OUTPUT_IC_stats.xls|Spreadsheet: Internal Capsule group statistics]]
 {|

@@ Line 57: / Line 57: @@
 =====Internal Capsule=====
 {|
 | [[Image:OUTPUT_ic0.PNG|200px]] || [[Image:OUTPUT_ic1.PNG|200px]] || [[Image:OUTPUT_ic2.PNG|200px]] || [[Image:OUTPUT_ic3.PNG|200px]] || [[Image:OUTPUT_ic4.PNG|200px]] || [[Image:OUTPUT_ic5.PNG|200px]]

← Older revision		Revision as of 13:33, 26 September 2007
Line 18:		Line 18:
	For the cingulum, the three different groups of tracts for each side (L,R) were combined for a single mean measure (note that not all 3 groups were found for every case).		For the cingulum, the three different groups of tracts for each side (L,R) were combined for a single mean measure (note that not all 3 groups were found for every case).

−	For the uncinate, internal capsule, and fornix, another matlab script was used to cut the tracts where they passed through the ROIs, so that the final measures included only the region of the tracts between the two ROIs. (The pictures below are positioned to show the ~~region measures~~; e.g., in the IC pictures, the tracts were measured between the two coronal slices which held the ROIs).	+	For the uncinate, internal capsule, and fornix, another matlab script was used to cut the tracts where they passed through the ROIs, so that the final measures included only the region of the tracts between the two ROIs. (The pictures below are positioned to show the regions measured; e.g., in the IC pictures, the tracts were measured between the two coronal slices which held the ROIs).

@@ Line 16: / Line 16: @@
 For all cases, mean scalar measures (FA, mode, trace, linear, planar, spherical) were computed along each individual tract, then combined into a single average measure for each group of tracts. Measurements were done using a Matlab script.
-For the cingulum, the three different groups of tracts for each side (L,R) were combined for a single mean measure.
+For the cingulum, the three different groups of tracts for each side (L,R) were combined for a single mean measure (note that not all 3 groups were found for every case).
 For the uncinate, internal capsule, and fornix, another matlab script was used to cut the tracts where they passed through the ROIs, so that the final measures included only the region of the tracts between the two ROIs. (The pictures below are positioned to show the region measures; e.g., in the IC pictures, the tracts were measured between the two coronal slices which held the ROIs).

@@ Line 14: / Line 14: @@
 ====Measurement====
-For all tracts, mean scalar measures (FA, mode, trace, linear, planar, spherical) were computed along each individual tract, then combined into a single average measure for each group of tracts. Measurements were done using a Matlab script.
+For all cases, mean scalar measures (FA, mode, trace, linear, planar, spherical) were computed along each individual tract, then combined into a single average measure for each group of tracts. Measurements were done using a Matlab script.
 For the cingulum, the three different groups of tracts for each side (L,R) were combined for a single mean measure.

@@ Line 50: / Line 50: @@
 =====Uncinate=====
+{|
 =====Internal Capsule=====

← Older revision		Revision as of 19:01, 25 September 2007
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	\|}		\|}
	=====Fornix=====		=====Fornix=====
		+
		+	{\|
		+	\| [[Image:OUTPUT_fx0.PNG\|200px]] \|\| [[Image:OUTPUT_fx1.PNG\|200px]] \|\| [[Image:OUTPUT_fx2.PNG\|200px]] \|\| [[Image:OUTPUT_fx3.PNG\|200px]] \|\| [[Image:OUTPUT_fx4.PNG\|200px]] \|\| [[Image:OUTPUT_fx5.PNG\|200px]]
		+	\|-
		+	\| [[Image:OUTPUT_fx6.PNG\|200px]] \|\| [[Image:OUTPUT_fx7.PNG\|200px]] \|\| [[Image:OUTPUT_fx8.PNG\|200px]] \|\| [[Image:OUTPUT_fx9.PNG\|200px]] \|\| [[Image:OUTPUT_fx10.PNG\|200px]] \|\| [[Image:OUTPUT_fx11.PNG\|200px]]
		+	\|}

← Older revision		Revision as of 18:49, 25 September 2007
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	=====Cingulum=====		=====Cingulum=====
		+
		+	{\|
		+	\| [[Image:OUTPUT_cing0.PNG\|200px]] \|\| [[Image:OUTPUT_cing1.PNG\|200px]] \|\| [[Image:OUTPUT_cing2.PNG\|200px]] \|\| [[Image:OUTPUT_cing3.PNG\|200px]] \|\| [[Image:OUTPUT_cing4.PNG\|200px]] \|\| [[Image:OUTPUT_cing5.PNG\|200px]]
		+	\|-
		+	\| [[Image:OUTPUT_cing6.PNG\|200px]] \|\| [[Image:OUTPUT_cing7.PNG\|200px]] \|\| [[Image:OUTPUT_cing8.PNG\|200px]] \|\| [[Image:OUTPUT_cing9.PNG\|200px]] \|\| [[Image:OUTPUT_cing10.PNG\|200px]] \|\| [[Image:OUTPUT_cing11.PNG\|200px]]
		+	\|}