Projects:ARRA:SlicerEM Meeting 07202010 - Revision history

JChris.FillionR: /* Attendants */

2010-07-20T22:17:03Z

Attendants

JChris.FillionR: /* Attendants */

2010-07-20T22:16:50Z

Attendants

JChris.FillionR: /* Questions */

2010-07-20T22:16:35Z

Questions

JChris.FillionR at 17:50, 20 July 2010

2010-07-20T17:50:11Z

JChris.FillionR: /* Questions */

2010-07-20T00:19:47Z

Questions

JChris.FillionR: Created page with 'Back to SlicerEM:Developer page = Purpose= * Address question related to EMSegmentLogic = Attendants = * Kilian Pohl * Sebastien Barre * J…'

2010-07-20T00:12:23Z

Created page with 'Back to SlicerEM:Developer page = Purpose= * Address question related to EMSegmentLogic = Attendants = * Kilian Pohl * Sebastien Barre * J…'

New page

[[Projects:ARRA:SlicerEM:Developer|Back to SlicerEM:Developer page]]

= Purpose=
* Address question related to EMSegmentLogic

= Attendants =
* Kilian Pohl
* Sebastien Barre
* Jean-Christophe Fillion-Robin
* Julien Finet

= Questions =
* vtkSlicerEMSegmentLogic - '''Old''' vs '''New''' pipeline
What the status regarding the two sets of methods ?

* ComputeIntensityDistributionsFromSpatialPrior / UpdateIntensityDistributionAuto
<pre>
int numTargetImages = workingTarget->GetNumberOfVolumes();
//
// // Sample
// {
// vtksys_stl::stringstream CMD ;
// CMD << "::EMSegmenterAutoSampleTcl::EMSegmentGaussCurveCalculationFromID " << vtkKWTkUtilities::GetTclNameFromPointer(app->GetMainInterp(), this->MRMLManager) << " 0.95 1 { " ;
// for (int i = 0 ; i < numTargetImages; i++) {
// CMD << workingTarget->GetNthVolumeNodeID(i) << " " ;
// }
// CMD << " } " << this->MRMLManager->GetVolumeNode(this->MRMLManager->GetTreeNodeSpatialPriorVolumeID(nodeID))->GetID() << " {" << this->MRMLManager->GetTreeNodeName(nodeID) << "} \n";
// // cout << CMD.str().c_str() << endl;
// if (atoi(app->Script(CMD.str().c_str()))) { return; }
// }
//
// //
// // propogate data to mrml node
// //
//
// vtkMRMLEMSTreeParametersLeafNode* leafNode = this->MRMLManager->GetTreeNode(nodeID)->GetParametersNode()->GetLeafParametersNode();
// for (int r = 0; r < numTargetImages; ++r)
// {
// {
// double value = atof(app->Script("expr $::EMSegment(GaussCurveCalc,Mean,%d)",r));
// leafNode->SetAutoLogMean(r, value);
// }
// for (int c = 0; c < numTargetImages; ++c)
// {
// double value = atof(app->Script("expr $::EMSegment(GaussCurveCalc,Covariance,%d,%d)",r,c));
// leafNode->SetAutoLogCovariance(r, c, value);
// }
// }
</pre>

← Older revision		Revision as of 22:16, 20 July 2010
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	</pre>		</pre>
	See [http://viewvc.slicer.org/viewcvs.cgi/trunk/Modules/EMSegment/Tcl/EMSegmentAutoSample.tcl?rev=13198&view=markup Modules/EMSegment/Tcl/EMSegmentAutoSample.tcl]		See [http://viewvc.slicer.org/viewcvs.cgi/trunk/Modules/EMSegment/Tcl/EMSegmentAutoSample.tcl?rev=13198&view=markup Modules/EMSegment/Tcl/EMSegmentAutoSample.tcl]
		+
		+	= Meeting note =
		+	* Old pipeline method -> Slice 3.4, New pipeline method -> Slicer3.6
		+	* Focus should be on NewPipeline method
		+	* Since TCL (according to Steve) should be available within Slicer4, the port of EMSegmentAutoSample related functionality is low priority

← Older revision		Revision as of 00:19, 20 July 2010
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	// }		// }
	</pre>		</pre>
		+	See [http://viewvc.slicer.org/viewcvs.cgi/trunk/Modules/EMSegment/Tcl/EMSegmentAutoSample.tcl?rev=13198&view=markup Modules/EMSegment/Tcl/EMSegmentAutoSample.tcl]

@@ Line 6: / Line 6: @@
 = Attendants =
 * Kilian Pohl
 * <del>Sebastien Barre</del>
 * Jean-Christophe Fillion-Robin

@@ Line 9: / Line 9: @@
 * Jean-Christophe Fillion-Robin
 * Julien Finet
 = Questions =