Projects:QIN:3D Slicer Annotation Image Markup:Use cases - Revision history

Fedorov: /* Iowa: Head and Neck cancer */

2012-03-22T22:57:35Z

Iowa: Head and Neck cancer

Fedorov: /* Iowa: Lung */

2012-01-11T00:21:43Z

Iowa: Lung

Fedorov at 21:25, 4 January 2012

2012-01-04T21:25:46Z

Fedorov at 20:33, 4 January 2012

2012-01-04T20:33:45Z

Fedorov at 20:32, 4 January 2012

2012-01-04T20:32:01Z

Fedorov: Created page with 'The following is the list of the annotation/markup use cases provided by the QIN groups. Use cases were described using the following template: File:QINUseCaseTemplate.doc F…'

2012-01-04T20:25:37Z

Created page with 'The following is the list of the annotation/markup use cases provided by the QIN groups. Use cases were described using the following template: File:QINUseCaseTemplate.doc F…'

New page

The following is the list of the annotation/markup use cases provided by the QIN groups. Use cases were described using the following template: [[File:QINUseCaseTemplate.doc]]

For the use case to be considered complete, it must include:
* textual description, based on the form above
* screenshots of the annotations as they appear in the tool used by the site
* images being annotated
* markup/annotations
* description of how the markup/annotations can be reproduced

=Stanford: Liver lesion=

''Use case incomplete, verbal description only''

* Contact: Daniel Rubin
* Image type: liver CT
* Annotation: N/A
* Markup: uni-dimensional measurement
* Tool used: EPAD
* Preprocessing: none

=NCI: BreastDx=

* Contact: Justin Kirby
* Image type: breast MRI
* Annotation: template-based. Template used for textual annotation: [[File:NCI_BreastDx_AIM_template.xml]]
* Markup: uni-dimensional measurement of the lesion.
* Tool used: TCGA ClearCanvas
* Preprocessing: none

=MGH: GBM=

''Use case partially complete, markup not included''

* Contact: Jayashree Kalpathy-Cramer
* Images: multi-modal brain MRI
* Annotation: template-based. Template used for textual annotation: [[File:MGH_GBM_AIM_template.xml]]
* Markup: binary segmentation of ROI (not included in the use case, not supported by ClearCanvas).
* Tool used for the use case: TCGA ClearCanvas. Other tools used: Slicer, Alice.
* Preprocessing: registration, motion correction, resampling (not included in the provided dataset)

=Iowa: Lung=

''Use case incomplete, verbal description only''

* Contact: Milan Sonka
* Images: PET, CT, MRI lungs
* Annotation: yes and no sometimes
* Markup: binary segmentation, unidimensional, bi-dimensional, three-dimensional, 4-dimensional, activity measurement and location
* Tools used: Slicer, Syngo via, Pinnacle, in-house tools

=Moffitt: Lung lesion=

''Use case incomplete, verbal description only. Masks and sample images are available (restricted access)''

* Contact: Dmitry Goldgof
* Images: Lung CT
* Annotation: none
* Markup: binary segmentation of ROI
* Tools used: in-house Matlab

=Maastro: Lung lesion=

* Contact: Andre Dekker
* Images: Lung CT
* Annotations: N/A
* Markup: DICOM RTSTRUCT
* Tools used: RT-specific tools

=BWH: Prostate cancer=

* Contact: Andrey Fedorov
* Images: Prostate MRI
* Annotations: none
* Markup: binary ROI mask drawn on T2w MRI
* Tools used: Slicer
* Preprocessing: registration of the DCE, DWI, T1w parameters to T2w MRI

@@ Line 67: / Line 67: @@
 [[Image:QINUseCase_Iowa.png|500px]]
 |}
 =Moffitt: Lung lesion=

← Older revision		Revision as of 21:25, 4 January 2012
Line 106:		Line 106:
	[[Image:QINUseCase_BWH.png\|500px]]		[[Image:QINUseCase_BWH.png\|500px]]
	\|}		\|}
		+
		+	=OHSU: Breast cancer=
		+	''Use case incomplete, verbal description only''
		+	* Contact: Fred Loney
		+	* Images: DCE MRI
		+	* Annotations: N/A
		+	* Markup: uni- and bi-dimensional measurements, lesion ROI markup
		+	* Tools used: PACS platform, or in-house-developed Matlab-based software
		+	* Preprocessing: N/A
		+	*

@@ Line 20: / Line 20: @@
 * Preprocessing: none
+|
-[[Image:QINUseCase_Stanford.png]]
+[[Image:QINUseCase_Stanford.png|500px]]
 |}
@@ Line 34: / Line 34: @@
 * Preprocessing: none
+|
-[[Image:QINUseCase_NCI.png]]
+[[Image:QINUseCase_NCI.png|500px]]
 |}
@@ Line 50: / Line 50: @@
 * Preprocessing: registration, motion correction, resampling (not included in the provided dataset)
+|
-[[Image:QINUseCase_MGH.png]]
+[[Image:QINUseCase_MGH.png|500px]]
 |}
@@ Line 65: / Line 65: @@
 * Tools used: Slicer, Syngo via, Pinnacle, in-house tools
+|
-[[Image:QINUseCase_Iowa.png]]
+[[Image:QINUseCase_Iowa.png|500px]]
 |}
@@ Line 79: / Line 79: @@
 * Tools used: in-house Matlab
+|
-[[Image:QINUseCase_Moffitt.png]]
+[[Image:QINUseCase_Moffitt.png|500px]]
 |}
@@ Line 91: / Line 91: @@
 * Tools used: RT-specific tools
+|
-[[Image:QINUseCase_Maastro.png]]
+[[Image:QINUseCase_Maastro.png|500px]]
 |}
@@ Line 104: / Line 104: @@
 * Preprocessing: registration of the DCE, DWI, T1w parameters to T2w MRI
+|
-[[Image:QINUseCase_BWH.png]]
+[[Image:QINUseCase_BWH.png|500px]]
 |}

@@ Line 53: / Line 53: @@
 |}
-=Iowa: Lung=
+=Iowa: Head and Neck cancer=
 ''Use case incomplete, verbal description only''

@@ Line 11: / Line 11: @@
 ''Use case incomplete, verbal description only''
+{|
 * Contact: Daniel Rubin
 * Image type: liver CT
@@ Line 18: / Line 19: @@
 * Tool used: EPAD
 * Preprocessing: none
 =NCI: BreastDx=
 * Contact: Justin Kirby
 * Image type: breast MRI
@@ Line 27: / Line 33: @@
 * Tool used: TCGA ClearCanvas
 * Preprocessing: none
 =MGH: GBM=
@@ Line 32: / Line 41: @@
 ''Use case partially complete, markup not included''
 * Contact: Jayashree Kalpathy-Cramer
 * Images: multi-modal brain MRI
@@ Line 38: / Line 49: @@
 * Tool used for the use case: TCGA ClearCanvas. Other tools used: Slicer, Alice.
 * Preprocessing: registration, motion correction, resampling (not included in the provided dataset)
 =Iowa: Lung=
@@ Line 43: / Line 57: @@
 ''Use case incomplete, verbal description only''
 * Contact: Milan Sonka
 * Images: PET, CT, MRI lungs
@@ Line 48: / Line 64: @@
 * Markup: binary segmentation, unidimensional, bi-dimensional, three-dimensional, 4-dimensional, activity measurement and location
 * Tools used: Slicer, Syngo via, Pinnacle, in-house tools
-−
+|
 =Moffitt: Lung lesion=
 ''Use case incomplete, verbal description only. Masks and sample images are available (restricted access)''
+{|
 * Contact: Dmitry Goldgof
 * Images: Lung CT
@@ Line 59: / Line 78: @@
 * Markup: binary segmentation of ROI
 * Tools used: in-house Matlab
 =Maastro: Lung lesion=
+{|
 * Contact: Andre Dekker
 * Images: Lung CT
@@ Line 67: / Line 90: @@
 * Markup: DICOM RTSTRUCT
 * Tools used: RT-specific tools
 =BWH: Prostate cancer=
+{|
 * Contact: Andrey Fedorov
 * Images: Prostate MRI
@@ Line 76: / Line 103: @@
 * Tools used: Slicer
 * Preprocessing: registration of the DCE, DWI, T1w parameters to T2w MRI