Projects:RegistrationDocumentation:Anonymization - Revision history

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2017-07-10T17:12:53Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

Meier: /* Notes */

2010-04-22T15:03:45Z

Notes

Meier at 15:00, 22 April 2010

2010-04-22T15:00:49Z

Meier: /* 3. Save as NRRD */

2010-04-22T14:48:51Z

3. Save as NRRD

Meier at 14:47, 22 April 2010

2010-04-22T14:47:01Z

Meier at 14:43, 22 April 2010

2010-04-22T14:43:41Z

Meier at 14:42, 22 April 2010

2010-04-22T14:42:02Z

Meier: Created page with 'all shared data-sets must be '''anonymized''' before we can post them. Sharing anonymized data in most cases is IRB exempt based on Code of Federal Regulations 45 CFR 46.101(b…'

2010-04-22T14:39:27Z

Created page with '*all shared data-sets must be '''anonymized''' before we can post them. *Sharing anonymized data in most cases is IRB exempt based on Code of Federal Regulations 45 CFR 46.101(b…'

New page

*all shared data-sets must be '''anonymized''' before we can post them.
*Sharing anonymized data in most cases is IRB exempt based on Code of Federal Regulations 45 CFR 46.101(b), which lists as exemption category 4:
Unless otherwise required by department or agency heads, [...] the following categories are exempt [...]: <br>
4.Research involving the collection or study of existing data, documents, records , pathological specimens,
or diagnostic specimens, if these sources are publicly available or if the information is recorded by the
investigator in such a manner that subjects cannot be identified, directly or through identifiers linked
to the subjects.

== 1. Load Your Image Data into 3DSlicer ==
*if you have not yet done so, download a recent version of 3DSlicer:
*load all images (fixed/reference and moving) into slicer. For a tutorial see:

== 2. View and Verify ==
*make sure data is complete (all the slices, fixed reference image and all moving images that are to be aligned

== 3. Save as NRRD ==
*From the ''File'' menu, select ''Save''
*click on the second button from the right to select all images for saving, or check all the boxes in the ''Select'' column
*if not already selected as default, choose '''NRRD (.nrrd)''' from the pulldown menu in the file format column
*select a new output directory by clicking on the icon next to ''Change Destination for All Selected'''.
*click on ''Save Selected''

== Notes ==
*if you are unsucessful in anonymizing the data as described above, let us know and we'll walk you through it.
*for some high-resolution structural head MRI we may have apply additional "defacing" (i.e. masking of image parts of the face and/or ears) before posting. This removal applies only to image content of facial features that might be recognizable as a 3D rendering. We will do this for you. Only the defaced data is kept.

@@ Line 9: / Line 9: @@
 == 1. Load Your Image Data into 3DSlicer ==
 *if you have not yet done so, download a recent version of 3DSlicer: [http://www.slicer.org/pages/Special:SlicerDownloads 3DSlicer Download]
-*load all images (fixed/reference and moving) into slicer. For a tutorial see the [http://www.slicer.org/slicerWiki/index.php/Slicer3.4:Training 3 Minute Slicer Intro Tutorial]
+*load all images (fixed/reference and moving) into slicer. For a tutorial see the [https://www.slicer.org/wiki/Slicer3.4:Training 3 Minute Slicer Intro Tutorial]
 == 2. View and Verify ==

@@ Line 18: / Line 18: @@
 :*From the ''File'' menu, select ''Save''
 :*click on the second button from the right to select all images for saving, or check all the boxes in the ''Select'' column
-[[Image:3DSlicer_NRRDformat.png|Select NRRD as output file frmat
+[[Image:3DSlicer_NRRDformat.png|Select NRRD as output file format]]
 *if not already selected as default, choose '''NRRD (.nrrd)''' from the pulldown menu in the file format column
 *select a new output directory by clicking on the icon next to ''Change Destination for All Selected'''.

@@ Line 18: / Line 18: @@
 :*From the ''File'' menu, select ''Save''
 :*click on the second button from the right to select all images for saving, or check all the boxes in the ''Select'' column
 *if not already selected as default, choose '''NRRD (.nrrd)''' from the pulldown menu in the file format column
 *select a new output directory by clicking on the icon next to ''Change Destination for All Selected'''.

@@ Line 24: / Line 24: @@
 == Notes ==
-*if you are unsucessful in anonymizing the data as described above, let us know and we'll walk you through it.
+*if you are unsucessful in anonymizing the data as described above, let us know and we'll walk you through it. For Registration Case Library submissions send an Email to meier at bwh.harvard.edu, other cases to slicer-users at bwh.harvard.edu
 *for some high-resolution structural head MRI we may have apply additional "defacing" (i.e. masking of image parts of the face and/or ears) before posting. This removal applies only to image content of facial features that might be recognizable as a 3D rendering. We will do this for you. Only the defaced data is kept.