Projects:RegistrationDocumentation:UseCaseInventory - Revision history

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2017-07-10T17:40:47Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

Meier at 17:14, 28 January 2015

2015-01-28T17:14:12Z

Meier: /* Source & Format */

2011-04-11T02:26:56Z

Source & Format

Meier: /* OTHER */

2011-03-24T21:29:07Z

OTHER

Meier: /* OTHER */

2011-03-24T21:28:09Z

OTHER

Meier at 21:22, 24 March 2011

2011-03-24T21:22:39Z

Meier: /* OTHER */

2011-03-24T21:09:55Z

OTHER

Meier at 02:42, 20 January 2011

2011-01-20T02:42:31Z

Meier: /* The Slicer Registration Case Library */

2010-12-21T22:10:14Z

The Slicer Registration Case Library

Meier: /* The Slicer Registration Case Library */

2010-12-21T22:10:00Z

The Slicer Registration Case Library

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 *Library organized by structure below. [[Projects:RegistrationDocumentation:RegLibTable|'''Library as sortable table see here.''']]
-*See here for detailed [http://www.slicer.org/slicerWiki/index.php/Slicer-3-6-FAQ '''Registration FAQ''']
+*See here for detailed [https://www.slicer.org/wiki/Slicer-3-6-FAQ '''Registration FAQ''']
 == BRAIN ==
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 *[[Projects:RegistrationDocumentation:ParameterPresetsTutorial|How to Load/Save Registration Parameter Presets]]
 *Links here also from the  [[Data|NA-MIC resource page]].To be updated when moving.
-*For a list/overview of registration options '''by method''' see [http://www.slicer.org/slicerWiki/index.php/Slicer3:Registration#Registration_in_3D_Slicer the '''3DSlicer Registration Portal Page''']
+*For a list/overview of registration options '''by method''' see [https://www.slicer.org/wiki/Slicer3:Registration#Registration_in_3D_Slicer the '''3DSlicer Registration Portal Page''']
 [[Category:Registration]]

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   Back to [[Projects:ARRASuplements|ARRA main page]], [[Projects:RegistrationDocumentation|Registration main page]]
 = The Slicer Registration Case Library =
 {| style="color:#000000; background-color:#aaaaaa;" cellpadding="10" cellspacing="0" border="0"
 |Welcome to the 3DSlicer Registration Case Library. This page is under continuous development as we add and refine case examples of image registration within 3DSlicer. The goal is for you to find here a case similar enough to your particular image registration problem to provide you with registration parameters, strategies and tutorials. The library is growing by virtue of '''user contributions'''; if you have an interesting case please consider our ''Call for Datasets'' on the right.  Successful registration strategies; algorithm choice and parameters vary greatly for different image contrast and content. Each listed case comprises a test dataset to try yourself,  a guided step-by-step '''tutorial''' that will show you how to register the case with 3DSlicer, the solution transform so you can compare, and a custom ''Registration Parameter Presets'' file with optimized registration parameters that you can load directly into slicer.

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 == Source & Format ==
-Data is collected from a variety of sources. Most we hope to originate from user contributions. Because we want to focus on the registration problem and not be distracted by image format or other data management issues, the datasets listed here are reformatted as NiFTI files. Cases under construction may be listed, and when complete a download link is added.
+Data is collected from a variety of sources. Most we hope to originate from user contributions. Because we want to focus on the registration problem and not be distracted by image format or other data management issues, the datasets listed here are reformatted as NRRD files. Cases under construction may be listed, and when complete a download link is added.
 *[[Projects:RegistrationDocumentation:UseCaseAdvertisement|'''Call for Datasets''']]
 *[[Projects:RegistrationDocumentation:RegLibList|Full List of Registration Library Cases]]
@@ Line 72: / Line 72: @@
 *[[Projects:RegistrationDocumentation:RegLibDataList|List of downloadable Registration Library data files]]
 * All image data is anonymized, i.e. there is no identifying or patient specific information in any of the posted data. We do not keep identifiers, so we cannot retrace.
 *[[Projects:RegistrationDocumentation:ParameterPresetsTutorial|How to Load/Save Registration Parameter Presets]]
 *Links here also from the  [[Data|NA-MIC resource page]].To be updated when moving.
 *For a list/overview of registration options '''by method''' see [http://www.slicer.org/slicerWiki/index.php/Slicer3:Registration#Registration_in_3D_Slicer the '''3DSlicer Registration Portal Page''']
 [[Category:Registration]]

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 |align="center" |[[Image:Registration_HLogo_Auxiliary.png| 135px |link= Projects:RegistrationDocumentation:UseCaseInventory:Auxiliary]]
 |-
-|The [[Projects:RegistrationDocumentation:UseCaseInventory:Auxiliary'''Auxiliary''' auxiliary]] collection contains  images & data that can be useful for performing, visualizing or validating registration.
+|The [[Projects:RegistrationDocumentation:UseCaseInventory:Auxiliary|'''Auxiliary''']] collection contains  images & data that can be useful for performing, visualizing or validating registration.
 |}

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 |The [[Projects:RegistrationDocumentation:UseCaseInventory:Animal|'''Animal MRI/CT''' ]] collection contains cases of aligning animal datasets.
 |-
-|align="center" |[[Image:Registration_Resample_icon.png| 135px |link= Projects:RegistrationDocumentation:UseCaseInventory:Auxiliary]]
+|align="center" |[[Image:Registration_HLogo_Auxiliary.png| 135px |link= Projects:RegistrationDocumentation:UseCaseInventory:Auxiliary]]
 |-
-|The [[Projects:RegistrationDocumentation:UseCaseInventory:Auxiliary'''Auxiliary''' ]] auxiliary images & data
+|The [[Projects:RegistrationDocumentation:UseCaseInventory:Auxiliary'''Auxiliary''' auxiliary]] collection contains  images & data that can be useful for performing, visualizing or validating registration.
 |}

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 |The [[Projects:RegistrationDocumentation:UseCaseInventory:WholeBody|'''Whole Body PET/CT''' ]] collection contains cases of registering different modalities of whole body imaging.
 |The [[Projects:RegistrationDocumentation:UseCaseInventory:Animal|'''Animal MRI/CT''' ]] collection contains cases of aligning animal datasets.
 |}

@@ Line 50: / Line 50: @@
 |The [[Projects:RegistrationDocumentation:UseCaseInventory:Animal|'''Animal MRI/CT''' ]] collection contains cases of aligning animal datasets.
 |}
 == How to get started ==
-*1. browse/search the library for a case similar to yours. The library is organized by organ (brain vs. non-brain), modality (MR, CT, PET), intra- vs. inter-subject). Each case also has a list of keywords, so you may try a direct search for a case matching yours.
+*1. browse/search the library for a case similar to yours. The library is organized by organ (brain vs. non-brain), modality (MR, CT, PET), intra- vs. inter-subject). Each case also has a list of keywords, so you may try a direct search for a case matching yours. Or for all cases in a  [[Projects:RegistrationDocumentation:RegLibTable|'''single sortable table  see here.''']]
 *2. If you find a good match, continue with 3. below. If you cannot find a good match, consider our  [[Projects:RegistrationDocumentation:UseCaseAdvertisement|'''Call for Datasets & Registration Service''']].
 *3. from the case description page, follow the links to download the data, preset file and tutorials.

← Older revision		Revision as of 22:10, 21 December 2010
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	Library organized by structure below. [[Projects:RegistrationDocumentation:RegLibTable\|'''Library as sortable table see here.''']]		Library organized by structure below. [[Projects:RegistrationDocumentation:RegLibTable\|'''Library as sortable table see here.''']]
		+	See here for detailed [http://www.slicer.org/slicerWiki/index.php/Slicer-3-6-FAQ '''Registration FAQ''']

	== BRAIN ==		== BRAIN ==