Projects:RegistrationImprovement - Revision history

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2017-07-10T17:36:56Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

Gcasey: /* Timeline of contributions */

2010-01-14T14:51:50Z

Timeline of contributions

Gcasey: /* Timeline of contributions */

2010-01-14T14:44:15Z

Timeline of contributions

Gcasey: /* TODO */

2010-01-14T14:41:12Z

TODO

Gcasey: /* Timeline of contributions */

2010-01-14T14:40:39Z

Timeline of contributions

Gcasey: /* Timeline of contributions */

2009-11-18T19:59:35Z

Timeline of contributions

Gcasey: /* Timeline of contributions */

2009-11-06T15:12:03Z

Timeline of contributions

Gcasey: /* October 22, 2009 */

2009-10-22T17:34:29Z

October 22, 2009

Gcasey: /* Timeline of contributions */

2009-10-22T17:33:40Z

Timeline of contributions

Gcasey: /* Timeline of contributions */

2009-10-16T16:44:21Z

Timeline of contributions

@@ Line 139: / Line 139: @@
 == September 11, 2009 ==
 Merge two new modules that present a simplified view of RegisterImages into Slicer3 to show up in Modules Menu hierarchy
-[http://www.slicer.org/slicerWiki/index.php/File:Registration-module-hierarchy-prototype.png Menu hierarchy screenshot]
+[https://www.slicer.org/wiki/File:Registration-module-hierarchy-prototype.png Menu hierarchy screenshot]
 == September 9, 2009 ==

@@ Line 32: / Line 32: @@
 = Timeline of contributions =
-== Jan 13, 2009 ==
+== Jan 13, 2010 ==
 * Mantis based tests for use case library
@@ Line 38: / Line 38: @@
 * Fixed some bugs in RegisterImagesMultiRes when dealing with images that have negative spacings.
-== Jan 7, 2009 ==
+== Jan 7, 2010 ==
 Sped up compilation of command line modules by 40 minutes.

@@ Line 37: / Line 37: @@
 * XML description of presets (thanks to Jim Miller)
 * Fixed some bugs in RegisterImagesMultiRes when dealing with images that have negative spacings.
 == November 16, 2009 ==

@@ Line 28: / Line 28: @@
 * Update documentation of RegisterImages
 * Testing on TBI and Huntingtons data
 = Timeline of contributions =

@@ Line 22: / Line 22: @@
 * Learn from FSL flirt to make an extensive test of a grid of possible rotations to get a good initialization for rotations.
 * Ability to specify masks that are used to limit were samples are drawn (this should ultimately be both a label image or a user drawn box)
 = Timeline of contributions =
 == November 16, 2009 ==

← Older revision		Revision as of 19:59, 18 November 2009
Line 24:		Line 24:

	= Timeline of contributions =		= Timeline of contributions =
		+
		+	== November 16, 2009 ==
		+
		+	Module committed to slicer. Currently only works on very specific images due to assumptions in the multi-resolution downsampling.

	== November 6, 2009 ==		== November 6, 2009 ==

← Older revision		Revision as of 15:12, 6 November 2009
Line 24:		Line 24:

	= Timeline of contributions =		= Timeline of contributions =
		+
		+	== November 6, 2009 ==
		+
		+	New registration module called MoreSearch implemented in NAMIC sandbox. A new registration module that is now in a rough draft stage for testing and further improvment. The improvements in this module are user of multi-resolution, a new set of ITK transforms that decomposes the parameter space into rotation, translation, scale, and skew, and an initializer based on ideas from the FSL algorithm.
		+
		+	{\|
		+	\|-
		+	\|[[Image:Cbg_registration_algorithm_test.png\|thumb\|500px\| Vervet data registration]]
		+	\| [[Image:Cbg_registration_algorithm_test2.png\|thumb\|500px\| Vervet data registration]]
		+	\|-
		+	\|}

	== October 22, 2009 ==		== October 22, 2009 ==

@@ Line 27: / Line 27: @@
 == October 22, 2009 ==
-Investigating MRML Presets
+Investigating MRML Presets.  The following can be saved as a .mrml scene and loaded into slicer to populate the parameter sets of RegisterImages.
 <pre>
 <MRML version="" userTags="">

← Older revision		Revision as of 17:33, 22 October 2009
Line 24:		Line 24:

	= Timeline of contributions =		= Timeline of contributions =
		+
		+	== October 22, 2009 ==
		+
		+	Investigating MRML Presets
		+	<pre>
		+	<MRML version="" userTags="">
		+	<CommandLineModule
		+	id="vtkMRMLCommandLineModuleNode1" name="Register Images Set 1"
		+	hideFromEditors="true" selectable="true" selected="false"
		+	title="Register%20Images"
		+	version="0.1.0.$Revision:%202104%20$(alpha)" resampledImage=""
		+	loadTransform="" saveTransform="" initialization="CentersOfMass"
		+	registration="PipelineAffine" metric="MattesMI" expectedOffset="10"
		+	expectedRotation="0.1" expectedScale="0.05" expectedSkew="0.01"
		+	verbosityLevel="Standard" sampleFromOverlap="false" fixedImageMask=""
		+	randomNumberSeed="0" numberOfThreads="0" minimizeMemory="false"
		+	interpolation="Linear" baselineImage=""
		+	baselineNumberOfFailedPixelsTolerance="1000"
		+	baselineIntensityTolerance="10" baselineRadiusTolerance="0"
		+	baselineDifferenceImage="" baselineResampledMovingImage=""
		+	fixedLandmarks="" movingLandmarks="" rigidMaxIterations="100"
		+	rigidSamplingRatio="0.04" affineMaxIterations="50"
		+	affineSamplingRatio="0.02" bsplineMaxIterations="20"
		+	bsplineSamplingRatio="0.1" controlPointSpacing="40" ></CommandLineModule>
		+	<CommandLineModule
		+	id="vtkMRMLCommandLineModuleNode2" name="Register Images Set 2"
		+	hideFromEditors="true" selectable="true" selected="false"
		+	title="Register%20Images"
		+	version="0.1.0.$Revision:%202104%20$(alpha)" resampledImage=""
		+	loadTransform="" saveTransform="" initialization="CentersOfMass"
		+	registration="PipelineRigid" metric="MattesMI" expectedOffset="20"
		+	expectedRotation="0.1" expectedScale="0.05" expectedSkew="0.01"
		+	verbosityLevel="Standard" sampleFromOverlap="false" fixedImageMask=""
		+	randomNumberSeed="0" numberOfThreads="0" minimizeMemory="false"
		+	interpolation="Linear" baselineImage=""
		+	baselineNumberOfFailedPixelsTolerance="1000"
		+	baselineIntensityTolerance="10" baselineRadiusTolerance="0"
		+	baselineDifferenceImage="" baselineResampledMovingImage=""
		+	fixedLandmarks="" movingLandmarks="" rigidMaxIterations="100"
		+	rigidSamplingRatio="0.03" affineMaxIterations="80"
		+	affineSamplingRatio="0.02" bsplineMaxIterations="20"
		+	bsplineSamplingRatio="0.1" controlPointSpacing="40"></CommandLineModule>
		+	</MRML>
		+	</pre>

	== October 16 2009 ==		== October 16 2009 ==

@@ Line 25: / Line 25: @@
 = Timeline of contributions =
-== October 6, 2008 ==
+== October 16 2009 ==
 Preliminary version of brute force rotation initializer implemented.  TODO save in sandbox then merge to Slicer module.