Projects:RegistrationLibrary:RegLib C05 - Revision history

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2017-07-10T17:06:40Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

Meier: /* Input */

2010-09-22T12:51:48Z

Input

Meier: /* Modules */

2010-09-22T12:51:28Z

Modules

Meier at 12:48, 22 September 2010

2010-09-22T12:48:27Z

Meier at 12:39, 22 September 2010

2010-09-22T12:39:45Z

Meier: /* Registration Results */

2010-09-21T22:18:02Z

Registration Results

Meier: /* Registration Results */

2010-09-21T22:17:41Z

Registration Results

Meier: /* Registration Results */

2010-09-21T22:17:29Z

Registration Results

Meier: /* Download */

2010-09-21T22:16:01Z

Download

Meier at 17:51, 1 June 2010

2010-06-01T17:51:31Z

@@ Line 17: / Line 17: @@
 === Modules ===
-*'''Slicer 3.6.1 recommended modules:  [http://www.slicer.org/slicerWiki/index.php/Modules:PythonSurfaceICPRegistration-Documentation-3.6 Surface Registration]
+*'''Slicer 3.6.1 recommended modules:  [https://www.slicer.org/wiki/Modules:PythonSurfaceICPRegistration-Documentation-3.6 Surface Registration]
 ===Objective / Background ===

@@ Line 7: / Line 7: @@
 === Input ===
 {| style="color:#bbbbbb; " cellpadding="10" cellspacing="0" border="0"
-|[[Image:RegLib C05 KneeMRI1.png|100px|lleft|this is the main fixed reference image. All images are ev. aligned into this space]]
+|[[Image:RegLib C05 KneeMRI1.png|150px|lleft|this is the main fixed reference image. All images are ev. aligned into this space]]
 |[[Image:RegArrow_Affine.png|70px|lleft]]
-|[[Image:RegLib C05 KneeMRI2.png|100px|lleft|this is the moving image]]
+|[[Image:RegLib C05 KneeMRI2.png|150px|lleft|this is the moving image]]
 |-
 |subject 1

@@ Line 17: / Line 17: @@
 === Modules ===
-*'''Slicer 3.6.1 recommended modules:  [http://www.slicer.org/slicerWiki/index.php/Modules:BRAINSFit BrainsFit], [http://www.slicer.org/slicerWiki/index.php/Modules:RegisterImagesMultiRes-Documentation-3.6 Robust Multiresolution Affine]'''
+*'''Slicer 3.6.1 recommended modules:  [http://www.slicer.org/slicerWiki/index.php/Modules:PythonSurfaceICPRegistration-Documentation-3.6 Surface Registration]
 ===Objective / Background ===

@@ Line 2: / Line 2: @@
 [[Projects:RegistrationDocumentation|Back to Registration main page]] <br>
 [[Projects:RegistrationDocumentation:UseCaseInventory|Back to Registration Use-case Inventory]] <br>
@@ Line 19: / Line 18: @@
 === Modules ===
 *'''Slicer 3.6.1 recommended modules:  [http://www.slicer.org/slicerWiki/index.php/Modules:BRAINSFit BrainsFit], [http://www.slicer.org/slicerWiki/index.php/Modules:RegisterImagesMultiRes-Documentation-3.6 Robust Multiresolution Affine]'''
 ===Objective / Background ===
@@ Line 28: / Line 26: @@
 ===Input Data===
-*[[Image:Button_red_fixed_white.jpg|20px]]reference/fixed : T1 SPGR , 0.9375 x 0.9375 x 1.4 mm voxel size, axial, RAS orientation.
+*fixed: T1 SPGR , 0.9375 x 0.9375 x 1.4 mm voxel size, axial.  + surface model from femur & tibia segmentation.
-*[[Image:Button_green_moving_white.jpg|20px]] moving: T1 SPGR , 0.9375 x 0.9375 x 1.2 mm voxel size, sagittal, RAS orientation.
+*moving: T1 SPGR , 0.9375 x 0.9375 x 1.2 mm voxel size, sagittal. + surface model from femur & tibia segmentation.
+=== Procedure / Pipeline ===
 === Registration Results===
 [[Image:RegLib C05 AGif reg.gif|200px|femur surface models before/after registration]]

@@ Line 3: / Line 3: @@
 [[Projects:RegistrationDocumentation:UseCaseInventory|Back to Registration Use-case Inventory]] <br>
-{| style="color:#bbbbbb; background-color:#333333;" cellpadding="10" cellspacing="0" border="0"
-|[[Image:RegLib C05 KneeMRI1.png|200px|lleft|this is the fixed reference image. All images are aligned into this space]]
+= <small>v3.6.1</small> [[Image:Slicer3-6Announcement-v1.png‎|150px]]  Slicer Registration Library Case 05: <br>  Inter-subject Knee MRI  =
-|[[Image:Arrow_left_gray.jpg|100px|lleft]]
+=== Input ===
-|[[Image:RegLib C05 KneeMRI2.png|200px|lleft|this is the moving image. The transform is calculated by matching this to the reference image]]
+{| style="color:#bbbbbb; " cellpadding="10" cellspacing="0" border="0"
-|align="left"|LEGEND<br>
+|[[Image:RegLib C05 KneeMRI1.png|100px|lleft|this is the main fixed reference image. All images are ev. aligned into this space]]
-[[Image:Button_red_fixed.jpg|20px|lleft]]  this indicates the reference image that is fixed and does not move. All other images are aligned into this space and resolution<br>
+|[[Image:RegArrow_Affine.png|70px|lleft]]
-[[Image:Button_green_moving.jpg|20px|lleft]]  this indicates the moving image that determines the registration transform.  <br>
+|[[Image:RegLib C05 KneeMRI2.png|100px|lleft|this is the moving image]]
 |-
-|[[Image:Button_red_fixed.jpg|40px|lleft]]  T1 SPGR
+|subject 1
+|
-|[[Image:Button_green_moving.jpg|40px|lleft]] T1 SPGR
+|subject 1
 |}
 ===Objective / Background ===
-The final goal is to align a segmentation prior model to aid in cartilage segmentation.
+The final goal is to align a segmentation prior model/atlas to aid in cartilage segmentation.
 === Keywords ===
 MRI, knee, inter-subject, segmentation
@@ Line 44: / Line 44: @@
 **[[Media:RegLib_C05_Tutorial.ppt|'''RegLib_C05_Tutorial''': PDF file <small> (.pdf file 0.5 MB) </small>]]
-<!--
+=== Acknowledgments ===

@@ Line 33: / Line 33: @@
 === Registration Results===
 {| style="color:#bbbbbb; background-color:#333333;" cellpadding="10" cellspacing="0" border="0"
-[[Image:RegLib C05 AGif reg.gif|femur surface models before/after registration]]
+[[Image:RegLib C05 AGif reg.gif|100px|femur surface models before/after registration]]
 |}

@@ Line 36: / Line 36: @@
 ===Download ===
-*'''[[Media:RegLib_05_KneeMRI.zip‎|download entire package  <small> (Data,Presets,Tutorial, Solution, zip file 9.8 MB) </small>]]'''
+*Data
+**[[Media:RegLib_C05_Data.zip‎|'''RegLib_C05_Data''': Example Dataset <small> (MRI images, surface models,Presets, Solution, zip file 9.5 MB) </small>]]
-[[Projects:RegistrationDocumentation:ParameterPresetsTutorial|Link to User Guide: How to Load/Save Registration Parameter Presets]]
+*Presets
 <!--

← Older revision		Revision as of 17:51, 1 June 2010
Line 4:		Line 4:

	==Slicer Registration Use Case Exampe #5: Inter-subject Knee MRI ==		==Slicer Registration Use Case Exampe #5: Inter-subject Knee MRI ==
		+	[[Image:under-construction_icon.jpg\|right\|100px\|this case is still under active development. Comments and priority requests welcome to the slicer-users mailing list]]

	{\| style="color:#bbbbbb; background-color:#333333;" cellpadding="10" cellspacing="0" border="0"		{\| style="color:#bbbbbb; background-color:#333333;" cellpadding="10" cellspacing="0" border="0"