Projects:RegistrationLibrary:RegLib C18 - Revision history

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2017-07-10T18:07:14Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2010-10-18T21:08:58Z

Download

2010-10-18T21:04:41Z

Procedure

2010-10-14T19:20:11Z

2010-10-14T19:19:10Z

2010-10-14T19:17:57Z

2010-10-14T19:17:00Z

2010-10-14T19:12:34Z

2010-10-14T17:37:36Z

Objective / Background

2010-10-13T21:05:21Z

Registration Results

@@ Line 33: / Line 33: @@
 === Modules ===
-*'''Slicer 3.6.1 recommended modules:  [http://www.slicer.org/slicerWiki/index.php/Modules:BRAINSFit BrainsFit], [http://www.slicer.org/slicerWiki/index.php/Modules:RegisterImages-Documentation-3.6 Expert Automated Registration]
+*'''Slicer 3.6.1 recommended modules:  [https://www.slicer.org/wiki/Modules:BRAINSFit BrainsFit], [https://www.slicer.org/wiki/Modules:RegisterImages-Documentation-3.6 Expert Automated Registration]
 ===Objective / Background ===

@@ Line 40: / Line 40: @@
 === Download ===
 *Data:
-**[[Media:RegLib_C18_Data.zip‎|'''Registration Library Case 04: MS Multi-contrast series (PD,T2, T1-GdDTPA): Lesion change assessment''' <small> (Data,Presets, Solution, zip file 17 MB) </small>]]
+**[[Media:RegLib_C18_Data.zip‎|'''Registration Library Case 18: Longitudinal multi-contrast series (T1,T2,FLAIR)''' <small> (Data,Presets, Solution, zip file 49 MB) </small>]]
 *Presets
-**[[Media:RegLib_C18_Presets_BrainsFit.mrml‎|Registration Presets (BrainsFit) <small> (mrml file ,12kB) </small>]]
+**[[Media:RegLib_C18_Registration_Presets.mrml‎|Registration Presets <small> (mrml file , 12kB) </small>]]
 **[[Projects:RegistrationDocumentation:ParameterPresetsTutorial|Link to User Guide: How to Load/Save Registration Parameter Presets]]</small>
 *Documentation

@@ Line 73: / Line 73: @@
 *'''Load & Center'''
 #Load example dataset via OpenScene...
 #Go to the ''Data'' module. You should see 6 images (e1_PD, e1_T2 etc.) and 3 solution transforms (Xform_...)
 #Set background view to e1_PD and foreground to e2_PD. Toggle to see misalignment

@@ Line 3: / Line 3: @@
 [[Projects:RegistrationDocumentation:UseCaseInventory|Back to Registration Use-case Inventory]] <br>
-= <small>v3.6.1</small> [[Image:Slicer3-6Announcement-v1.png‎|150px]]  Slicer Registration Library Case 18: <br>   =
+= <small>v3.6.1</small> [[Image:Slicer3-6Announcement-v1.png‎|150px]]  Slicer Registration Library Case 18: <br>  Serial Multi-contrast MRI in Aging Study  =
 === Input ===
 {| style="color:#bbbbbb; " cellpadding="2" cellspacing="0" border="0"

@@ Line 5: / Line 5: @@
 = <small>v3.6.1</small> [[Image:Slicer3-6Announcement-v1.png‎|150px]]  Slicer Registration Library Case 18: <br>   =
 === Input ===
-{| style="color:#bbbbbb; " cellpadding="10" cellspacing="0" border="0"
+{| style="color:#bbbbbb; " cellpadding="2" cellspacing="0" border="0"
 |[[Image:RegLib_C18_Thumb1.png|100px|lleft]]
 |[[Image:RegArrow_Affine.png|70px|lleft]]

@@ Line 6: / Line 6: @@
 === Input ===
 {| style="color:#bbbbbb; " cellpadding="10" cellspacing="0" border="0"
-|[[Image:Reglib_C18_Thumb1.png|100px|lleft]]
+|[[Image:RegLib_C18_Thumb1.png|100px|lleft]]
 |[[Image:RegArrow_Affine.png|70px|lleft]]
-|[[Image:Reglib_C18_Thumb2.png|100px|lleft]]
+|[[Image:RegLib_C18_Thumb2.png|100px|lleft]]
-|[[Image:Reglib_C18_Thumb3.png|100px|lleft]]
+|[[Image:RegLib_C18_Thumb3.png|100px|lleft]]
 |-
 |exam 1: T1
@@ Line 21: / Line 21: @@
+|
 |-
-|[[Image:Reglib_C18_Thumb4.png|100px|lleft]]
+|[[Image:RegLib_C18_Thumb4.png|100px|lleft]]
 |[[Image:RegArrow_Affine.png|70px|lleft]]
-|[[Image:Reglib_C18_Thumb5.png|100px|lleft]]
+|[[Image:RegLib_C18_Thumb5.png|100px|lleft]]
-|[[Image:Reglib_C18_Thumb6.png|100px|lleft]]
+|[[Image:RegLib_C18_Thumb6.png|100px|lleft]]
 |-
 |exam 2: T1

@@ Line 6: / Line 6: @@
 === Input ===
 {| style="color:#bbbbbb; " cellpadding="10" cellspacing="0" border="0"
-|[[Image:Reglib_C18_Thumb1.jpg|100px|lleft|this is the main fixed reference image. All images are ev. aligned into this space]]
+|[[Image:Reglib_C18_Thumb1.jpg|100px|lleft]]
 |[[Image:RegArrow_Affine.png|70px|lleft]]
-|[[Image:Reglib_C04_Thumb_.jpg|100px|lleft|this is the intra-subject moving image. ]]
+|[[Image:Reglib_C18_Thumb2.jpg|100px|lleft]]
 |-
-|exam 1: PD
+|exam 1: T1
 |exam 1: T2
 |-
 |[[Image:RegArrow_AffineVert.png|70px|lleft]]
@@ Line 21: / Line 21: @@
+|
 |-
-|[[Image:Reglib_C04_Thumb_PD2.jpg|100px|lleft|this is the inter-subject moving image, but also the reference for exam 2]]
+|[[Image:Reglib_C18_Thumb4.jpg|100px|lleft]]
 |[[Image:RegArrow_Affine.png|70px|lleft]]
-|[[Image:Reglib_C04_Thumb_Gd2.jpg|100px|lleft|this is the moving image. ]]
+|[[Image:Reglib_C18_Thumb5.jpg|100px|lleft]]
 |-
-|exam 2: PD
+|exam 2: T1
 |exam 2: T2
 |}

@@ Line 36: / Line 36: @@
 ===Objective / Background ===
-This scenario occurs in many forms whenever we wish to assess change in a series of multi-contrast MRI. The follow-up scan(s) are to be aligned with the baseline, but also the different series within each exam need to be co-registered, since the subject may have moved between acquisitions. Hence we have a set of nested registrations. This particular exam features a dual echo scan (PD/T2), where the two structural scans are aligned by default. The post-contrast T1-GdDTPA scan however is not necessarily aligned with the dual echo. Also the post-contrast scan is taken with a clipped field of view (FOV) and a lower axial resolution, with 4mm slices and a 1mm gap (which we treat here as a de facto 5mm slice).
+This scenario occurs in many forms whenever we wish to assess change in a series of multi-contrast MRI. The follow-up scan(s) are to be aligned with the baseline, but also the different series within each exam need to be co-registered, since the subject may have moved between acquisitions. Hence we have a set of nested registrations. This particular exam features T1-, FLAIR and T2-weighted scans.
 === Download ===
 *Data:

@@ Line 145: / Line 145: @@
 === Registration Results===
-[[Image:RegLib_C18_AGif_e1.gif|200px|left|Exam 1 co-registered]] Exam 1 co-registered: FLAIR and T2 aligned with T1 <br>
+[[Image:RegLib_C18_AGif_e1.gif|300px|Exam 1 co-registered]] Exam 1 co-registered: FLAIR and T2 aligned with T1 <br><br>
-[[Image:RegLib_C18_AGif_e2.gif|200px|left|Exam 2 co-registered]] Exam 1 co-registered: FLAIR and T2 aligned with T1 <br>
+[[Image:RegLib_C18_AGif_e2.gif|300px|Exam 2 co-registered]] Exam 1 co-registered: FLAIR and T2 aligned with T1 <br><br>
-[[Image:RegLib_C18_AGif_e2-e1.gif|200px|left|Exam 2 aligned to Exam 1]] Exam 2 aligned to Exam 1 (showing FLAIR and T2 of exam 2 also)<br>
+[[Image:RegLib_C18_AGif_e2-e1.gif|300px|Exam 2 aligned to Exam 1]] Exam 2 aligned to Exam 1 (showing FLAIR and T2 of exam 2 also) <br>