Projects:RegistrationLibrary:RegLib C31 - Revision history

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2017-07-10T18:07:09Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2010-12-08T17:05:08Z

Input

2010-12-08T17:02:07Z

Input

2010-12-08T16:59:21Z

Input

2010-12-08T16:56:16Z

Input

2010-12-06T19:45:55Z

2010-12-06T19:38:47Z

2010-11-04T20:00:11Z

Procedure Overview

2010-11-04T19:58:53Z

Procedure Overview

2010-11-04T19:43:47Z

Download

@@ Line 46: / Line 46: @@
 === Modules ===
-*'''Slicer 3.6.1 recommended modules:  [http://www.slicer.org/slicerWiki/index.php/Modules:BRAINSFit BrainsFit]'''
+*'''Slicer 3.6.1 recommended modules:  [https://www.slicer.org/wiki/Modules:BRAINSFit BrainsFit]'''
 === Download ===
@@ Line 54: / Line 54: @@
 === Modules ===
-*'''Slicer 3.6.1 recommended modules:  [http://www.slicer.org/slicerWiki/index.php/Modules:BRAINSFit BrainsFit]
+*'''Slicer 3.6.1 recommended modules:  [https://www.slicer.org/wiki/Modules:BRAINSFit BrainsFit]
 ===Objective / Background ===

@@ Line 7: / Line 7: @@
 === Input ===
 {| style="color:#bbbbbb; " cellpadding="2" cellspacing="0" border="0"
-|[[Image:RegLib_C31_Thumb1.png|100px|lleft]]
+|[[Image:RegLib_C31_Thumb1.png|100px]]
 |[[Image:RegArrow_Affine.png|70px|lleft]]
-|[[Image:RegLib_C31_Thumb2.png|100px|lleft]]
+|[[Image:RegLib_C31_Thumb2.png|100px]]
-|[[Image:RegLib_C31_Thumb3.png|100px|lleft]]
+|[[Image:RegLib_C31_Thumb3.png|100px]]
-|[[Image:RegLib_C31_Thumb4.png|100px|lleft]]
+|[[Image:RegLib_C31_Thumb4.png|100px]]
 |[[Image:RegArrow_Affine.png|70px|lleft]]
-|[[Image:RegLib_C31_Thumb5.png|100px|lleft]]
+|[[Image:RegLib_C31_Thumb5.png|100px]]
 |-
 |exam 1: T1
@@ Line 28: / Line 28: @@
+|
 |-
-|[[Image:RegLib_C31_Thumb6.png|100px|lleft]]
+|[[Image:RegLib_C31_Thumb6.png|100px]]
 |[[Image:RegArrow_Affine.png|70px|lleft]]
-|[[Image:RegLib_C31_Thumb7.png|100px|lleft]]
+|[[Image:RegLib_C31_Thumb7.png|100px]]
-|[[Image:RegLib_C31_Thumb8.png|100px|lleft]]
+|[[Image:RegLib_C31_Thumb8.png|100px]]
-|[[Image:RegLib_C31_Thumb9.png|100px|lleft]]
+|[[Image:RegLib_C31_Thumb9.png|100px]]
-|[[Image:RegArrow_Affine.png|70px|lleft]]
+|[[Image:RegArrow_Affine.png|70px]]
-|[[Image:RegLib_C31_Thumb10.png|100px|lleft]]
+|[[Image:RegLib_C31_Thumb10.png|100px]]
 |-
 |exam 2: T1

@@ Line 12: / Line 12: @@
 |[[Image:RegLib_C31_Thumb3.png|100px|lleft]]
 |[[Image:RegLib_C31_Thumb4.png|100px|lleft]]
 |[[Image:RegLib_C31_Thumb5.png|100px|lleft]]
 |-
@@ Line 19: / Line 20: @@
 |exam 1: GRE
 |exam 1: PD
 |exam 1: DWI
 |-
@@ Line 31: / Line 33: @@
 |[[Image:RegLib_C31_Thumb8.png|100px|lleft]]
 |[[Image:RegLib_C31_Thumb9.png|100px|lleft]]
 |[[Image:RegLib_C31_Thumb10.png|100px|lleft]]
 |-
@@ Line 38: / Line 41: @@
 |exam 2: GRE
 |exam 2: PD
 |exam 2: DWI
 |}

@@ Line 12: / Line 12: @@
 |[[Image:RegLib_C31_Thumb3.png|100px|lleft]]
 |[[Image:RegLib_C31_Thumb4.png|100px|lleft]]
 |[[Image:RegLib_C31_Thumb5.png|100px|lleft]]
 |-
@@ Line 20: / Line 19: @@
 |exam 1: GRE
 |exam 1: PD
 |exam 1: DWI
 |-
-|[[Image:RegArrow_AffineVert.png|70px|lleft]]
+|[[Image:RegArrow_NonRigidVert.png|70px|lleft]]
+|
+|
@@ Line 33: / Line 31: @@
 |[[Image:RegLib_C31_Thumb8.png|100px|lleft]]
 |[[Image:RegLib_C31_Thumb9.png|100px|lleft]]
 |[[Image:RegLib_C31_Thumb10.png|100px|lleft]]
 |-
@@ Line 41: / Line 38: @@
 |exam 2: GRE
 |exam 2: PD
 |exam 2: DWI
 |}

@@ Line 6: / Line 6: @@
 === Input ===
-{| style="color:#bbbbbb; " cellpadding="10" cellspacing="0" border="0"
+{| style="color:#bbbbbb; " cellpadding="2" cellspacing="0" border="0"
-|[[Image:RegLib_C31_Thumb1.png|150px|lleft|this is the fixed T1 reference image. All images are aligned into this space]]
+|[[Image:RegLib_C31_Thumb1.png|100px|lleft]]
-|[[Image:RegArrow_Affine.png|100px|lleft]]
+|[[Image:RegArrow_Affine.png|70px|lleft]]
-|[[Image:RegLib_C31_Thumb2.png|150px|lleft|this is the FLAIR scan, to be registered with the T1]]
+|[[Image:RegLib_C31_Thumb2.png|100px|lleft]]
-|[[Image:RegLib_C31_Thumb3.png|150px|lleft|this is the T1Gd image, to be registered with the T1]]
+|[[Image:RegLib_C31_Thumb3.png|100px|lleft]]
-|[[Image:RegArrow_NonRigid.png|100px|lleft]]
+|[[Image:RegLib_C31_Thumb4.png|100px|lleft]]
-|[[Image:RegLib_C31_Thumb4.png|150px|lleft|this is the DTI tensor image, to be registered with the T1]]
+|[[Image:RegArrow_NonRigid.png|70px|lleft]]
 |-
-|fixed image/target<br>T1
+|exam 1: T1
+|
-|moving image<br>FLAIR
+|exam 1: FLAIR
-|moving image 2a<br>T1Gd
+|exam 1: GRE
-|moving image 2b<br>DTI tensor
+|exam 1: PD
 |}

@@ Line 4: / Line 4: @@
 = <small>v3.6.1</small> [[Image:Slicer3-6Announcement-v1.png‎|150px]]  Slicer Registration Library Case 31: TBI   =
 === Download ===
 *DATA

@@ Line 3: / Line 3: @@
 [[Projects:RegistrationDocumentation:UseCaseInventory|Back to Registration Use-case Inventory]] <br>
-= <small>v3.6.1</small> [[Image:Slicer3-6Announcement-v1.png‎|150px]]  Slicer Registration Library Case xx: TBI   =
+= <small>v3.6.1</small> [[Image:Slicer3-6Announcement-v1.png‎|150px]]  Slicer Registration Library Case 31: TBI   =
 === Download ===
 *DATA

@@ Line 33: / Line 33: @@
 *Scene1_NotApplied: contains all the nested registration transforms, but no resampling has been performed. In the slice view all images will show as registered. To apply the actual resampling in that position, first select/highlight each image volume in the MRML tree (left click) and then select ''Harden Transforms'' from the ''Data'' module (right click).
 ** [[Image:RegLib_C31_MRML-tree.png|MRML tree hierarchy. The T1_e1 image is the main reference. T1_e2 is the intermediate reference for exam 2]]
-*Scene2_Applied: as scene 1, but all images have been resampled.
+*Scene2_Unregistered: as scene 1, but all images have been moved '''outside''' the transforms, i.e. in original position.
 **[[Image:RegLib_C31_MRML-tree2.png|MRML tree hierarchy with images moved outside the transforms, i.e. in original position. ]]