Projects:RegistrationLibrary:RegLib C33 - Revision history

Meier: /* Input */

2012-05-16T20:16:02Z

Input

2012-05-16T20:11:23Z

2012-05-16T20:10:22Z

Slicer4 Modules used

2012-05-16T20:09:53Z

2012-05-16T20:09:24Z

Slicer 4 Modules

2012-05-16T20:08:34Z

2012-05-16T20:08:00Z

Download

2012-05-16T20:06:40Z

Download

2012-05-16T19:53:16Z

Registration Results

2012-05-16T19:45:05Z

Procedures

@@ Line 8: / Line 8: @@
 {| style="color:#bbbbbb; " cellpadding="10" cellspacing="0" border="0"
 |[[Image:RegLib_C33_Thumb1.png|150px|lleft|this is the fixed T1 reference image. All images are aligned into this space]]
 |[[Image:RegLib_C33_Thumb2.png|150px|lleft|this is the FLAIR scan, to be registered with the T1]]
-|[[Image:RegLib_C33_Thumb3.png|150px|lleft|this is the T1Gd image, to be registered with the T1]]
+|[[Image:RegArrow_Affine_Right.png|100px|lleft]]
 |[[Image:RegArrow_NonRigid.png|100px|lleft]]
 |[[Image:RegLib_C33_Thumb4.png|150px|lleft|this is the DTI tensor image, to be registered with the T1]]
 |-
 |fixed image/target<br>T1
+|
 |moving image 2a<br>T1Gd
 |moving image 2b<br>DTI tensor
 |}

@@ Line 3: / Line 3: @@
 [[Projects:RegistrationDocumentation:UseCaseInventory|Back to Registration Use-case Inventory]] <br>
-==<small>v3.6.1</small> [[Image:Slicer3-6Announcement-v1.png‎|150px]] Slicer Registration Library Exampe #33: Diffusion Weighted Image Volume: align with structural reference MRI ==
+==<small>updated for '''v4.1'''</small> [[Image:Slicer4_RegLibLogo.png|150px]] <br> Slicer Registration Library Case #33: Diffusion Weighted Image Volume: align with structural reference MRI ==
 === Input ===

@@ Line 22: / Line 22: @@
 === Slicer4 Modules used ===
-* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/DiffusionWeightedMasking ''Modules:Diffusion:DiffusionWeightedImages:DiffusionWeightedVolumeMasking'' ]
+* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/DiffusionWeightedMasking DiffusionWeightedVolumeMasking module]
 * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/DiffusionTensorEstimation Diffusion Tensor Estimation module]
 * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/BRAINSFit General Registration (BRAINS) module]

@@ Line 22: / Line 22: @@
 === Slicer4 Modules used ===
-* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/DiffusionTensorEstimation Diffusion Tensor Estimation module]
+* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/DiffusionWeightedMasking ''Modules:Diffusion:DiffusionWeightedImages:DiffusionWeightedVolumeMasking'' ]
 * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/DiffusionTensorEstimation Diffusion Tensor Estimation module]
 * [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/BRAINSFit General Registration (BRAINS) module]

@@ Line 21: / Line 21: @@
 |}
-=== Slicer 4 Modules ===
+=== Slicer4 Modules used ===
-*'''Slicer 3.6.1 recommended modules:  [http://www.slicer.org/slicerWiki/index.php/Modules:BRAINSFit BrainsFit]'''
+* [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/DiffusionTensorEstimation Diffusion Tensor Estimation module]
 ===Objective / Background ===

@@ Line 21: / Line 21: @@
 |}
-=== Modules ===
+=== Slicer 4 Modules ===
 *'''Slicer 3.6.1 recommended modules:  [http://www.slicer.org/slicerWiki/index.php/Modules:BRAINSFit BrainsFit]'''
@@ Line 28: / Line 28: @@
 === Keywords ===
 MRI, brain, head, intra-subject, DTI, DWI
 ===Input Data===
@@ Line 130: / Line 134: @@
 [[Image:RegLib_C33_DTIdeform.gif|400px|lleft|DTI deformation applied (before/after registration]] DTI deformation applied (before/after registration
 === Discussion: Registration Challenges ===

@@ Line 131: / Line 131: @@
 ===Download ===
-*[[Media:RegLib_C33_Data.zip‎ ‎|'''RegLib_C33_Data''' Raw starting set: DWI, T1, T1Gd, FLAIR <small> (NRRD files, zip file 137 MB) </small>]]'''
+*[[Media:RegLib_C33_Data.zip‎ ‎|'''RegLib_C33_Data''':  Raw starting set: DWI, T1, T1Gd, FLAIR <small> (NRRD files, zip file 137 MB) </small>]]'''
-*[[Media:RegLib_C33_DataSuppl.zip‎ ‎|'''RegLib_C33_DataSuppl''' all processed results & solution transforms  <small> (NRRD files, zip file 141 MB) </small>]]'''
+*[[Media:RegLib_C33_DataSuppl.zip‎ ‎|'''RegLib_C33_DataSuppl''':  all processed results & solution transforms  <small> (NRRD files, zip file 141 MB) </small>]]'''
 === Discussion: Registration Challenges ===

@@ Line 126: / Line 126: @@
 === Registration Results===
-[[Image:RegLib_C33_registeredDTI.gif|400px|lleft|DTI aligned with T1Gd]]
+[[Image:RegLib_C33_registeredDTI.gif|400px|lleft|DTI aligned with T1Gd]] DTI aligned with T1Gd
 ===Download ===

@@ Line 95: / Line 95: @@
 ##Leave all other settings at default
 ##click: Apply
-*'''Phase V:  Register DTI (masked)'''
+*'''Phase V:  Register DWI (masked)'''
 #open the [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.1/Modules/BRAINSFit General Registration (BRAINS) module]
 ##''Fixed Image Volume'': FLAIR_Xf1
 ##''Moving Image Volume'': DWI_baseline
 ##Output Settings:
-###''Slicer BSpline Transform": create new transform, rename to "Xf3_DTI-FLAIR"
+###''Slicer BSpline Transform": create new transform, rename to "Xf3_DWI-FLAIR"
 ###''Slicer Linear Transform'': none
 ###''Output Image Volume'': create new volume,  rename to DWI_baseline_Xf2