Projects:RegistrationLibrary:RegLib C41 - Revision history

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2017-07-10T18:07:17Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2011-06-23T15:29:56Z

Acknowledgments

2011-06-23T15:29:42Z

Acknowledgments

2011-06-22T19:03:59Z

Acknowledgments

2011-06-22T19:03:40Z

2011-06-22T19:03:25Z

2011-06-22T19:01:54Z

v3.6.1 150px Slicer Registration Library Case #41: Mouse Brain MRI control mice

2011-06-22T19:01:10Z

Registration Results

2011-06-22T19:00:53Z

Registration Results

2011-06-22T19:00:43Z

Registration Results

@@ Line 16: / Line 16: @@
 === Modules ===
-*'''Slicer 3.6.1 recommended modules:'''  [http://www.slicer.org/slicerWiki/index.php/Modules:BRAINSFit '''BrainsFit'''],  [http://www.slicer.org/slicerWiki/index.php/Modules:Editor-Documentation-3.6 Editor], [http://www.slicer.org/slicerWiki/index.php/Modules:N4ITKBiasFieldCorrection-Documentation-3.6 N4 Bias Correction]
+*'''Slicer 3.6.1 recommended modules:'''  [https://www.slicer.org/wiki/Modules:BRAINSFit '''BrainsFit'''],  [https://www.slicer.org/wiki/Modules:Editor-Documentation-3.6 Editor], [https://www.slicer.org/wiki/Modules:N4ITKBiasFieldCorrection-Documentation-3.6 N4 Bias Correction]
 ===Objective / Background ===
 Aim is to register the two brains of control mice to eachother.
@@ Line 37: / Line 37: @@
 ===Key Strategies===
-*'''Slicer 3.6.1 recommended modules:  [http://www.slicer.org/slicerWiki/index.php/Modules:BRAINSFit BrainsFit]
+*'''Slicer 3.6.1 recommended modules:  [https://www.slicer.org/wiki/Modules:BRAINSFit BrainsFit]
 === Procedures ===
@@ Line 51: / Line 51: @@
 #save
 *'''Phase II: Bias Field correction'''
-#go to the  [http://www.slicer.org/slicerWiki/index.php/Modules:N4ITKBiasFieldCorrection-Documentation-3.6 N4 Bias Correction] module
+#go to the  [https://www.slicer.org/wiki/Modules:N4ITKBiasFieldCorrection-Documentation-3.6 N4 Bias Correction] module
 #select 11_5202 as input and create a new volume as output, renamed to 11_5202_b
 #increase iteration parameters to 50,40,40

@@ Line 111: / Line 111: @@
 <br>
 === Acknowledgments ===
-Many thanks to ''Lili X. Cai''  from the [[http://web.mit.edu/jasanofflab/  Jasanoff Laboratory at MIT] for sharing the Data and registration problem.
+Many thanks to ''Lili X. Cai''  from the [http://web.mit.edu/jasanofflab/  Jasanoff Laboratory at MIT] for sharing the Data and registration problem.

@@ Line 111: / Line 111: @@
 <br>
 === Acknowledgments ===
-Many thanks to ''Lili X. Cai''  from MIT for sharing the Data and registration problem.
+Many thanks to ''Lili X. Cai''  from the [[http://web.mit.edu/jasanofflab/  Jasanoff Laboratory at MIT] for sharing the Data and registration problem.

@@ Line 111: / Line 111: @@
 <br>
 === Acknowledgments ===
-Many thanks to "Lili X. Cai"  from MIT for sharing the Data and registration problem.
+Many thanks to ''Lili X. Cai''  from MIT for sharing the Data and registration problem.

@@ Line 110: / Line 110: @@
 [[Image:RegLib_C41_defgrid.png |500px|deformation visualized by grid overlay]] deformation visualized by grid overlay<br>
 <br>
-=== Acknowledgments ==
+=== Acknowledgments ===
 Many thanks to "Lili X. Cai"  from MIT for sharing the Data and registration problem.

← Older revision		Revision as of 19:03, 22 June 2011
Line 110:		Line 110:
	[[Image:RegLib_C41_defgrid.png \|500px\|deformation visualized by grid overlay]] deformation visualized by grid overlay<br>		[[Image:RegLib_C41_defgrid.png \|500px\|deformation visualized by grid overlay]] deformation visualized by grid overlay<br>
	<br>		<br>
		+	=== Acknowledgments ==
		+	Many thanks to "Lili X. Cai" from MIT for sharing the Data and registration problem.

@@ Line 3: / Line 3: @@
 [[Projects:RegistrationDocumentation:UseCaseInventory|Back to Registration Use-case Inventory]] <br>
-= <small>v3.6.1</small> [[Image:Slicer3-6Announcement-v1.png‎|150px]]  Slicer Registration Library Case #41: Mouse Brain MRI  control mice=
+= <small>v3.6.3</small> [[Image:Slicer3-6Announcement-v1.png‎|150px]]  Slicer Registration Library Case #41: Mouse Brain MRI  control mice=
 === Input ===
 {| style="color:#bbbbbb; " cellpadding="10" cellspacing="0" border="0"

@@ Line 102: / Line 102: @@
 [[Image:RegLib_C41_Reorient_before.png‎ |500px|original brain in non-RAS orientation]] original, not RAS<br>
 [[Image:RegLib_C41_Reorient_after.png‎ |500px|original brain in proper RAS orientation]] original,after reorientation into RAS<br>
 [[Image:RegLib_C41_unreg.gif‎ |500px|original unregistered brains]] original, not registered<br>
 [[Image:RegLib_C41_affine.gif‎|500px| affine registered brains]] affine registered<br>

@@ Line 99: / Line 99: @@
 === Registration Results===
-shown are, from left to right, panels of '''axial''', '''sagittal''' and '''coronal''' views.
+shown are, from left to right, panels of '''axial''', '''sagittal''' and '''coronal''' views. <br>
 [[Image:RegLib_C41_Reorient_before.png‎ |500px|original brain in non-RAS orientation]] original, not RAS<br>
 [[Image:RegLib_C41_Reorient_after.png‎ |500px|original brain in proper RAS orientation]] original,after reorientation into RAS<br>