Projects:RegistrationLibrary:RegLib C43 - Revision history

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2017-07-10T18:07:10Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

Meier: moved Projects:RegistrationLibrary:RegLib 43 to Projects:RegistrationLibrary:RegLib C43

2011-08-18T20:41:08Z

moved Projects:RegistrationLibrary:RegLib 43 to Projects:RegistrationLibrary:RegLib C43

Meier at 21:15, 12 August 2011

2011-08-12T21:15:39Z

Meier: /* Modules */

2011-08-12T21:14:12Z

Modules

Meier: /* Registration Results */

2011-08-12T21:13:41Z

Registration Results

Meier: /* Registration Results */

2011-08-12T21:13:27Z

Registration Results

Meier: /* Registration Results */

2011-08-12T21:13:10Z

Registration Results

Meier: /* Input */

2011-08-12T21:11:01Z

Input

Meier: /* Input */

2011-08-12T21:10:47Z

Input

Meier at 20:52, 12 August 2011

2011-08-12T20:52:28Z

@@ Line 18: / Line 18: @@
 === Modules ===
 *Preprocessing
-** [http://www.slicer.org/slicerWiki/index.php/Modules:Editor-Documentation-3.6 Editor]
+** [https://www.slicer.org/wiki/Modules:Editor-Documentation-3.6 Editor]
-**[http://www.slicer.org/slicerWiki/index.php/Modules:ModelMaker-Documentation-3.6 Model Maker] module
+**[https://www.slicer.org/wiki/Modules:ModelMaker-Documentation-3.6 Model Maker] module
-**[http://www.slicer.org/slicerWiki/index.php/Modules:VotingBinaryHoleFilling-Documentation-3.6 Binary Hole Filling]  module
+**[https://www.slicer.org/wiki/Modules:VotingBinaryHoleFilling-Documentation-3.6 Binary Hole Filling]  module
 *Registration
-**'''Slicer 3.6.3 recommended modules: [http://www.slicer.org/slicerWiki/index.php/Modules:PythonSurfaceICPRegistration-Documentation-3.6 Surface Registration] module
+**'''Slicer 3.6.3 recommended modules: [https://www.slicer.org/wiki/Modules:PythonSurfaceICPRegistration-Documentation-3.6 Surface Registration] module
 ===Objective / Background ===
@@ Line 49: / Line 49: @@
 #Open case scene file or import image data: RegLib_C43_SlicerScene1.mrml
 #Preprocess segmentation for building surface models
-##we need to fill in the interior of the vertebral body, we use the morphological closing ([http://www.slicer.org/slicerWiki/index.php/Modules:Editor-Documentation-3.6 Editor]) and [http://www.slicer.org/slicerWiki/index.php/Modules:VotingBinaryHoleFilling-Documentation-3.6 Binary Hole Filling] module
+##we need to fill in the interior of the vertebral body, we use the morphological closing ([https://www.slicer.org/wiki/Modules:Editor-Documentation-3.6 Editor]) and [https://www.slicer.org/wiki/Modules:VotingBinaryHoleFilling-Documentation-3.6 Binary Hole Filling] module
-##go to the [http://www.slicer.org/slicerWiki/index.php/Modules:Editor-Documentation-3.6 Editor]
+##go to the [https://www.slicer.org/wiki/Modules:Editor-Documentation-3.6 Editor]
 ###select "intact_CT" as master volume and "intact_seg" volume as label map to edit
 ###Select the ''Dilation'' tool, click on 8-neighbor checkbox for connectiviy, click ''Apply''
 ###Select the ''Erosion'' tool, click on 8-neighbor checkbox for connectiviy, click ''Apply''
-##go to the  [http://www.slicer.org/slicerWiki/index.php/Modules:VotingBinaryHoleFilling-Documentation-3.6 Binary Hole Filling]  module
+##go to the  [https://www.slicer.org/wiki/Modules:VotingBinaryHoleFilling-Documentation-3.6 Binary Hole Filling]  module
 ###Select the "intact_seg" volume as input
 ###Set Radius to 11,11,11
@@ Line 61: / Line 61: @@
 #repeat above preprocessing for the second segmentation "defect_seg"
 #Build Surface Models
-##go to the [http://www.slicer.org/slicerWiki/index.php/Modules:ModelMaker-Documentation-3.6 Model Maker] module
+##go to the [https://www.slicer.org/wiki/Modules:ModelMaker-Documentation-3.6 Model Maker] module
 ##Select preprocessed (see above)  "intact_segfilled" as input volume
 ##Create a new model hierarchy that will contain both models
@@ Line 72: / Line 72: @@
 ##click '' Apply''
 ##Repeat for second labelmap "defect_segfilled"
-##go to [http://www.slicer.org/slicerWiki/index.php/Modules:Models-Documentation-3.6 Models] module
+##go to [https://www.slicer.org/wiki/Modules:Models-Documentation-3.6 Models] module
 ##select both models and change the color by clicking on the ''Set Color..'' field
 ##set Opacity slider for one of the models to ~0.8
 #Surface Registration
 ##Note that Surface Registration on Slicer version 3.6.3 on some platforms may not operate properly (as of Aug. 2011). '''Slicer v.3.6.4''' is recommended
-##go to [http://www.slicer.org/slicerWiki/index.php/Modules:PythonSurfaceICPRegistration-Documentation-3.6 Surface Registration]] module
+##go to [https://www.slicer.org/wiki/Modules:PythonSurfaceICPRegistration-Documentation-3.6 Surface Registration]] module
 ##''Landmark transform node'': select ''Rigid''
 ##Max. number of iterations: increase to 150
@@ Line 86: / Line 86: @@
 ##''Output Transform'': select "New Transform", rename to "Xf1_defect-to-intact_Rigid" or similar
 ##click ''Apply''
-#Go to the [http://www.slicer.org/slicerWiki/index.php/Modules:Data-Documentation-3.6 Data module]
+#Go to the [https://www.slicer.org/wiki/Modules:Data-Documentation-3.6 Data module]
 ##select the "defect_model" node and drag it inside the newly generated transform node
 ##go to the 3D view and drag the mouse to force a display update. You  should see the alignment of the two surfaces
 ##to resample: select ''Harden Transforms'' from the right-click popup menu associated with the model
-##to resample image and labelmaps: drag into transform node and also select ''Harden Transforms'' , or use the dedicated [http://www.slicer.org/slicerWiki/index.php/Modules:ResampleScalarVectorDWIVolume-Documentation-3.6 Resampling module]
+##to resample image and labelmaps: drag into transform node and also select ''Harden Transforms'' , or use the dedicated [https://www.slicer.org/wiki/Modules:ResampleScalarVectorDWIVolume-Documentation-3.6 Resampling module]
 === Registration Results===

@@ Line 17: / Line 17: @@
 === Modules ===
-*'''Slicer 3.6.3 recommended modules: [http://www.slicer.org/slicerWiki/index.php/Modules:PythonSurfaceICPRegistration-Documentation-3.6 Surface Registration] module
+*Preprocessing
 ===Objective / Background ===
@@ Line 39: / Line 44: @@
 *Presets
 **[[Media:RegLib_C43_Presets.mrml‎|'''RegLib_C43_Presets.mrml''': registration parameter presets<small> (.mrml text file 12 kB) </small>]]
 === Procedure / Pipeline ===

@@ Line 17: / Line 17: @@
 === Modules ===
-*'''Slicer 3.6.3 recommended modules:  [http://www.slicer.org/slicerWiki/index.php/Modules:BRAINSFit BRAINSFit]
+*'''Slicer 3.6.3 recommended modules: [http://www.slicer.org/slicerWiki/index.php/Modules:PythonSurfaceICPRegistration-Documentation-3.6 Surface Registration] module
 ===Objective / Background ===

@@ Line 88: / Line 88: @@
 === Registration Results===
 [[Image:RegLib_C43_unregistered.gif|400px|original unregistered]] unregistered <br>
-[[Image:RegLib_C43_registered_Model1.gif|200px|registered models]][[Image:RegLib_C43_registered_Model2.gif|200px|registered models]] after surface registration <br>
+[[Image:RegLib_C43_registered_Model1.gif|200px|registered models]][[Image:RegLib_C43_registered_Model2.gif|200px|registered models]] surface registration <br>
 === Acknowledgments ===

@@ Line 88: / Line 88: @@
 === Registration Results===
 [[Image:RegLib_C43_unregistered.gif|400px|original unregistered]] unregistered <br>
-[[Image:RegLib_C43_registered_Model1.gif|300px|registered models]][[Image:RegLib_C43_registered_Model2.gif|300px|registered models]] after surface registration <br>
+[[Image:RegLib_C43_registered_Model1.gif|200px|registered models]][[Image:RegLib_C43_registered_Model2.gif|200px|registered models]] after surface registration <br>
 === Acknowledgments ===

← Older revision	Revision as of 20:41, 18 August 2011
(No difference)

@@ Line 7: / Line 7: @@
 === Input ===
 {| style="color:#bbbbbb; " cellpadding="10" cellspacing="0" border="0"
-|[[Image:RegLib_C43_Thumb1b.png|150px|lleft|this is the main fixed reference image. All images are ev. aligned into this space]] [Image:RegLib_C43_Thumb1.png|150px|lleft|this is the main fixed reference image. All images are ev. aligned into this space]]
+|[[Image:RegLib_C43_Thumb1b.png|150px|lleft|this is the main fixed reference image. All images are ev. aligned into this space]] [[Image:RegLib_C43_Thumb1.png|150px|lleft|this is the main fixed reference image. All images are ev. aligned into this space]]
 |[[Image:RegArrow_Rigid.png|70px|lleft]]
 |[[Image:RegLib_C43_Thumb2b.png|150px|lleft|this is the moving image]][[Image:RegLib_C43_Thumb2.png|150px|lleft|this is the moving image]]

@@ Line 33: / Line 33: @@
 *fixed:  segmented CT "intact_seg", 0.4 x 0.4 x 0.4 mm voxel size, axial; 284 x 262 x 148 unsigned short image
 *moving: segmented CT "defect_seg", 0.5 x 0.5 x 0.50 mm voxel size, axial; 221 x 206 x 113 unsigned short image
 === Procedure / Pipeline ===
@@ Line 83: / Line 89: @@
 [[Image:RegLib_C43_unreg.gif|400px|original unregistered]] unregistered <br>
 [[Image:RegLib_C43_registered_Model1.gif|300px|registered models]][[Image:RegLib_C43_registered_Model2.gif|300px|registered models]] after surface registration <br>
 === Acknowledgments ===