RSNA2012 Planning - Revision history

Grundlett: Text replacement - "[http://www.na-mic.org/Wiki/images/" to "[https://na-mic.org/w/images/"

2017-07-10T18:27:04Z

Text replacement - "[http://www.na-mic.org/Wiki/images/" to "[https://na-mic.org/w/images/"

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2017-07-10T18:00:50Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

Fedorov at 00:20, 9 November 2013

2013-11-09T00:20:27Z

Fedorov: /* List of Slicer Modules involved in RSNA tutorials & demos */

2012-11-23T23:49:52Z

List of Slicer Modules involved in RSNA tutorials & demos

Marianna at 22:19, 23 November 2012

2012-11-23T22:19:52Z

Marianna at 21:08, 23 November 2012

2012-11-23T21:08:28Z

Marianna at 20:31, 23 November 2012

2012-11-23T20:31:11Z

Pinter: Tutorial 7 (SlicerRT) description

2012-11-08T18:22:29Z

Tutorial 7 (SlicerRT) description

Marianna: /* Quantitative Imaging Reading Room */

2012-11-07T20:10:27Z

Quantitative Imaging Reading Room

Marianna: /* Quantitative Imaging Reading Room */

2012-11-07T20:09:18Z

Quantitative Imaging Reading Room

@@ Line 24: / Line 24: @@
   || Compare View, Clipping, Save, Restore, Scene Views, Dicom studies sorting, Dicom networking  || Data, Volumes, Models, Scene Views + DICOM ( note: the DICOM part will be a new addition to the slides) || Steve || Sonia
 |-
-|| Classroom Course 2 - ICIA11, Nov.25, 11:00-12:30 pm  ||  [http://www.slicer.org/slicerWiki/images/c/c6/Slicer4QuantitativeImaging.pdf  Quantitative Imaging Tutorial] ||  ICIA 11 datasets: [http://www.na-mic.org/Wiki/images/7/73/PETCTFusion-Tutorial-Data.zip PETCT data],  [http://www.slicer.org/slicerWiki/images/b/b2/ChangeTracker2011.zip Change Tracker Data] || Change Tracker, Compare Views, Volume Rendering, CropVolume, Crosshairs, BRAINSFit || Change Tracker, Volume Rendering, BRAINSFit, CropVolume} || Steve || Sonia
+|| Classroom Course 2 - ICIA11, Nov.25, 11:00-12:30 pm  ||  [http://www.slicer.org/slicerWiki/images/c/c6/Slicer4QuantitativeImaging.pdf  Quantitative Imaging Tutorial] ||  ICIA 11 datasets: [https://na-mic.org/w/images/7/73/PETCTFusion-Tutorial-Data.zip PETCT data],  [http://www.slicer.org/slicerWiki/images/b/b2/ChangeTracker2011.zip Change Tracker Data] || Change Tracker, Compare Views, Volume Rendering, CropVolume, Crosshairs, BRAINSFit || Change Tracker, Volume Rendering, BRAINSFit, CropVolume} || Steve || Sonia
 |-
 |}
@@ Line 61: / Line 61: @@
 ||8|| White matter exploration for neurosurgical planning || [[media:WhiteMatterExplorationData.zip‎| White Matter Exploration dataset]]   || [https://www.slicer.org/wiki/Documentation/4.1/Training#Slicer4_Neurosurgical_Planning_Tutorial Neurosurgical planning Tutorial]] || Diffusion (Estimation, Tractography, Fiducial Seeding), Editor, Model Maker || Data, Volumes, Editor, Fiducials, Diffusion Tensor Estimation, Diffusion Tensor Scalar Measurements, Labelmap Seeding, Tractography Fiducial Seeding, Tractography Display || Demian || Ron
 |-
-||9|| Longitudinal analysis of meningioma growth||  [http://www.na-mic.org/Wiki/images/7/73/PETCTFusion-Tutorial-Data.zip PETCT data],  [http://www.slicer.org/slicerWiki/images/b/b2/ChangeTracker2011.zip Change Tracker Data] || [http://www.slicer.org/slicerWiki/images/c/c6/Slicer4QuantitativeImaging.pdf  Quantitative Imaging Tutorial] || Change Tracker, Compare Views, Volume Rendering, CropVolume, Crosshairs, BRAINSFit || Change Tracker, Volume Rendering, BRAINSFit, CropVolume || Jc || Andrey
+||9|| Longitudinal analysis of meningioma growth||  [https://na-mic.org/w/images/7/73/PETCTFusion-Tutorial-Data.zip PETCT data],  [http://www.slicer.org/slicerWiki/images/b/b2/ChangeTracker2011.zip Change Tracker Data] || [http://www.slicer.org/slicerWiki/images/c/c6/Slicer4QuantitativeImaging.pdf  Quantitative Imaging Tutorial] || Change Tracker, Compare Views, Volume Rendering, CropVolume, Crosshairs, BRAINSFit || Change Tracker, Volume Rendering, BRAINSFit, CropVolume || Jc || Andrey
 |-
 ||10||Image-guided prostate interventions || [[media:RSNA2011_Prostate.zip | Demo dataset from RSNA'2011 -- crash while switching to  a scene view]] see [http://www.na-mic.org/Bug/view.php?id=1523 here.], [[Media:RSNA2012_Prostate.zip | Demo dataset created from scratch in Slicer4 RSNA'2012]] || Pre-op/Intra-op registration; [http://www.na-mic.org/Wiki/index.php/Slicer4:Prostate_mpMRI_review_use_case Use Case Demo] [[media:RSNA2010_Prostate.zip | Prostate Data]]  || Linked Viewing || Annotations, Models, Crosshairs, CompareViews || Jim || Andrey

@@ Line 13: / Line 13: @@
 ** If there's a tutorial already existing, the developer should be able to go through the testing on all platforms and only contact the tutorial writer with feedback or questions.  In the case of demos or atlas datasets, the developer should discuss with the clinical contact about what functionality should be supported and test that this is working as expected on all platforms.
 ** In all cases the developer should try to provide a test that loads and manipulates the data, using either a python script or Qt testing, to help automate the testing process for future releases.
-** Developers should consider following [http://www.slicer.org/slicerWiki/index.php/Documentation/Nightly/Developers/Tutorials/SelfTestModule these instructions for writing a python self test] so that they can easily and reproducibly confirm that demos are running correctly on all platforms.
+** Developers should consider following [https://www.slicer.org/wiki/Documentation/Nightly/Developers/Tutorials/SelfTestModule these instructions for writing a python self test] so that they can easily and reproducibly confirm that demos are running correctly on all platforms.
 == RSNA hands-on courses ==
@@ Line 45: / Line 45: @@
   || Compare View, Clipping, Save, Restore, Scene Views, Dicom studies sorting, Dicom networking  || Data, Volumes, Models, Scene Views || Jim || Sonia
 |-
-||1 ||Data Loading and Visualization || <strike>[http://www.slicer.org/slicerWiki/images/6/61/Slicer3VisualizationDataset.zip Slicer3Visualization Data] </strike>[http://www.slicer.org/slicerWiki/images/f/f4/3DVisualizationData.zip 3D Visualization Data] || [http://www.slicer.org/slicerWiki/index.php/Documentation/4.1/Training#Slicer4_Data_Loading_and_3D_Visualization ‎  Slicer4Visualization Tutorial]|| Compare View, Clipping, Save, Restore, Scene Views, DICOM studies sorting, DICOM networking (?) || Data, Volumes, Models, Scene Views || Jim || Sonia
+||1 ||Data Loading and Visualization || <strike>[http://www.slicer.org/slicerWiki/images/6/61/Slicer3VisualizationDataset.zip Slicer3Visualization Data] </strike>[http://www.slicer.org/slicerWiki/images/f/f4/3DVisualizationData.zip 3D Visualization Data] || [https://www.slicer.org/wiki/Documentation/4.1/Training#Slicer4_Data_Loading_and_3D_Visualization ‎  Slicer4Visualization Tutorial]|| Compare View, Clipping, Save, Restore, Scene Views, DICOM studies sorting, DICOM networking (?) || Data, Volumes, Models, Scene Views || Jim || Sonia
 |-
-||2||MRI-based topographic parcellation of human brain || [[Media:RSNA2010_EMS.zip | EM Segmenter Data]] || registration, segmentation [http://www.slicer.org/slicerWiki/index.php/EMSegmenter-Tasks EMSegmenter Tasks] || EM Segmenter || EMSegmenter || Kilian || Ron
+||2||MRI-based topographic parcellation of human brain || [[Media:RSNA2010_EMS.zip | EM Segmenter Data]] || registration, segmentation [https://www.slicer.org/wiki/EMSegmenter-Tasks EMSegmenter Tasks] || EM Segmenter || EMSegmenter || Kilian || Ron
 |-
 ||3|| Volume Rendering #1 Head || [[Media:RSNA2010_OsirixManixDataset.zip  |  Head CT Scan (Osirix Manix Dataset)]] || show cropping, transfer functions, GPU, slice composite view, Annotations || Volume Rendering and Annotations || Volume Rendering, Annotations, Scene Views || Julien || Ron
@@ Line 59: / Line 59: @@
 ||7|| Radiotherapy || [http://slicer.kitware.com/midas3/folder/859 SlicerRT ART dose verification data] || [https://www.assembla.com/spaces/slicerrt/wiki/20121127_Slicer_tutorials_at_RSNA_2012 SlicerRT RSNA2012 Tutorial] || SlicerRT, Plastimatch || DICOM, General Registration (BRAINS), Resample Image (BRAINS),<br>SlicerRT: DicomRtImport, Dose Accumulation, Dose Volume Histogram || Csaba || Andras
 |-
-||8|| White matter exploration for neurosurgical planning || [[media:WhiteMatterExplorationData.zip‎| White Matter Exploration dataset]]   || [http://www.slicer.org/slicerWiki/index.php/Documentation/4.1/Training#Slicer4_Neurosurgical_Planning_Tutorial Neurosurgical planning Tutorial]] || Diffusion (Estimation, Tractography, Fiducial Seeding), Editor, Model Maker || Data, Volumes, Editor, Fiducials, Diffusion Tensor Estimation, Diffusion Tensor Scalar Measurements, Labelmap Seeding, Tractography Fiducial Seeding, Tractography Display || Demian || Ron
+||8|| White matter exploration for neurosurgical planning || [[media:WhiteMatterExplorationData.zip‎| White Matter Exploration dataset]]   || [https://www.slicer.org/wiki/Documentation/4.1/Training#Slicer4_Neurosurgical_Planning_Tutorial Neurosurgical planning Tutorial]] || Diffusion (Estimation, Tractography, Fiducial Seeding), Editor, Model Maker || Data, Volumes, Editor, Fiducials, Diffusion Tensor Estimation, Diffusion Tensor Scalar Measurements, Labelmap Seeding, Tractography Fiducial Seeding, Tractography Display || Demian || Ron
 |-
 ||9|| Longitudinal analysis of meningioma growth||  [http://www.na-mic.org/Wiki/images/7/73/PETCTFusion-Tutorial-Data.zip PETCT data],  [http://www.slicer.org/slicerWiki/images/b/b2/ChangeTracker2011.zip Change Tracker Data] || [http://www.slicer.org/slicerWiki/images/c/c6/Slicer4QuantitativeImaging.pdf  Quantitative Imaging Tutorial] || Change Tracker, Compare Views, Volume Rendering, CropVolume, Crosshairs, BRAINSFit || Change Tracker, Volume Rendering, BRAINSFit, CropVolume || Jc || Andrey

← Older revision		Revision as of 00:20, 9 November 2013
Line 31:		Line 31:

	Logistics: The exhibit must be fully installed by 5:00 pm on Saturday, November 24. The Lakeside Learning Center exhibit area will open on Saturday, November 24 from 8:00 am until 10:00 pm for installation.		Logistics: The exhibit must be fully installed by 5:00 pm on Saturday, November 24. The Lakeside Learning Center exhibit area will open on Saturday, November 24 from 8:00 am until 10:00 pm for installation.
		+
		+	* [[Media:RSNA2012QIRRPoster_3DSlicer-spujol.AF.pptx\|Poster PPT]]
		+	* [[Media:RSNA2012QIRRHandout.AF.pptx\|Handout PPT]]
		+

	Tentative list of demonstrations for the RSNA 2012 Slicer booth. Needs further development and testing		Tentative list of demonstrations for the RSNA 2012 Slicer booth. Needs further development and testing

@@ Line 95: / Line 95: @@
 **Skull Stripper
 ** Reporting
+** Longitudinal PET CT
 *Documentation: We need all [http://wiki.slicer.org/slicerWiki/index.php/Documentation/4.2#Core_Modules core modules] reasonably well documented.

@@ Line 63: / Line 63: @@
 ||11|| Brain Atlas || [http://www.na-mic.org/publications/item/view/2037 NAC Multi-modality MRI-based Atlas of the Brain]<br>[http://www.na-mic.org/publications/bitstream/download/5521 Slicer4 version] || Show model hierarchies, visibility, scene views restore|| Linked Viewing || Data, Volumes, Models, Scene Views || Nicole || Marianna
 |-
-||12|| Head and Neck Atlas || [http://www.na-mic.org/publications/item/view/2256 Head and Neck Atlas]<br>[http://www.na-mic.org/publications/bitstream/download/5509 Slicer4 version] || Show model hierarchies, visibility, scene views restore|| Linked Viewing || Data, Volumes, Models, Scene Views || Nicole || Marianna
+||12|| Head and Neck Atlas || [http://www.na-mic.org/publications/item/view/2271 Head and Neck Atlas]<br>[http://www.spl.harvard.edu/publications/bitstream/download/5527 Slicer4 version] || Show model hierarchies, visibility, scene views restore|| Linked Viewing || Data, Volumes, Models, Scene Views || Nicole || Marianna
 |-
 ||13|| Abdominal Atlas || [http://www.na-mic.org/publications/item/view/1918 Abdominal Atlas]<br>[http://www.na-mic.org/publications/bitstream/download/5522 Slicer4 version]|| Show model hierarchies, visibility, scene views restore|| Linked Viewing || Data, Volumes, Models, Scene Views || Nicole || Marianna

@@ Line 61: / Line 61: @@
 ||10||Image-guided prostate interventions || [[media:RSNA2011_Prostate.zip | Demo dataset from RSNA'2011 -- crash while switching to  a scene view]] see [http://www.na-mic.org/Bug/view.php?id=1523 here.], [[Media:RSNA2012_Prostate.zip | Demo dataset created from scratch in Slicer4 RSNA'2012]] || Pre-op/Intra-op registration; [http://www.na-mic.org/Wiki/index.php/Slicer4:Prostate_mpMRI_review_use_case Use Case Demo] [[media:RSNA2010_Prostate.zip | Prostate Data]]  || Linked Viewing || Annotations, Models, Crosshairs, CompareViews || Jim || Andrey
 |-
-||11|| Brain Atlas || [http://www.na-mic.org/publications/item/view/2037 NAC Multi-modality MRI-based Atlas of the Brain] || Work in progress  - atlases are being updated|| Linked Viewing || Data, Volumes, Models, Scene Views || Nicole || Marianna
+||11|| Brain Atlas || [http://www.na-mic.org/publications/bitstream/download/5521 NAC Multi-modality MRI-based Atlas of the Brain] || Show model hierarchies, visibility, scene views restore|| Linked Viewing || Data, Volumes, Models, Scene Views || Nicole || Marianna
 |-
 ||12|| Head and Neck Atlas || [http://www.na-mic.org/publications/item/view/2256 Head and Neck Atlas] || Show model hierarchies, visibility, scene views restore|| Linked Viewing || Data, Volumes, Models, Scene Views || Nicole || Marianna
 |-
-||13|| Abdominal Atlas ||  [http://www.slicer.org/publications/item/view/1918 Abdominal Atlas]|| Show model hierarchies, visibility, scene views restore|| Linked Viewing || Data, Volumes, Models, Scene Views || Nicole || Marianna
+||13|| Abdominal Atlas ||  [http://www.na-mic.org/publications/bitstream/download/5522 Abdominal Atlas]|| Show model hierarchies, visibility, scene views restore|| Linked Viewing || Data, Volumes, Models, Scene Views || Nicole || Marianna
 |-
-||14|| Knee Atlas|| [http://www.slicer.org/publications/item/view/1953 Knee Atlas] || Show model hierarchies, visibility, scene views restore || Linked Viewing || Data, Volumes, Models, Scene Views || Nicole || Marianna
+||14|| Knee Atlas|| [http://www.na-mic.org/publications/bitstream/download/5523 Knee Atlas] || Show model hierarchies, visibility, scene views restore || Linked Viewing || Data, Volumes, Models, Scene Views || Nicole || Marianna
 |}

@@ Line 53: / Line 53: @@
 ||6|| Traumatic Brain Injury Case Analysis || [[Media:TBI-DemoScene-RSNA2011.zip  | TBI Demo Data (UCLA)]] [http://www.nitrc.org/frs/download.php/1766/adult-atlas-abc1.1.zip Atlas data link] ||  [http://wiki.na-mic.org/Wiki/index.php/File:TBISegmentation_TutorialContestSummer2011.pdf TBI tutorial] || ABC Segmentation, Model Maker, Editor, Annotations || Data, ABC Segmentation, Model Maker, Editor, Annotations, Scene Views || Alex || Jack Van Horn
 |-
-||7|| Radiotherapy || [http://forge.abcd.harvard.edu/gf/download/frsrelease/85/1828/popi-plan.tar.gz Plastimatch Dose Warping Data (MGH)] || [http://www.na-mic.org/Wiki/index.php/File:PlastimatchDose_TutorialContestSummer2012.pdf Plastimatch Tutorial] || Plastimatch, DVH extension (Csaba) || Data, Plastimatch Extension: DICOM/DICOM-RT Import, DICOM/DICOM-RT Export, B-Spine Deformable Registration,XFORMWARP Warping with transform Transforms,  || Csaba || Andras
+||7|| Radiotherapy || [http://slicer.kitware.com/midas3/folder/859 SlicerRT ART dose verification data] || [https://www.assembla.com/spaces/slicerrt/wiki/20121127_Slicer_tutorials_at_RSNA_2012 SlicerRT RSNA2012 Tutorial] || SlicerRT, Plastimatch || DICOM, General Registration (BRAINS), Resample Image (BRAINS),<br>SlicerRT: DicomRtImport, Dose Accumulation, Dose Volume Histogram || Csaba || Andras
 |-
 ||8|| White matter exploration for neurosurgical planning || [[media:WhiteMatterExplorationData.zip‎| White Matter Exploration dataset]]   || [http://www.slicer.org/slicerWiki/index.php/Documentation/4.1/Training#Slicer4_Neurosurgical_Planning_Tutorial Neurosurgical planning Tutorial]] || Diffusion (Estimation, Tractography, Fiducial Seeding), Editor, Model Maker || Data, Volumes, Editor, Fiducials, Diffusion Tensor Estimation, Diffusion Tensor Scalar Measurements, Labelmap Seeding, Tractography Fiducial Seeding, Tractography Display || Demian || Ron