RobustStatisticsSegmentation - Revision history

Ygao: /* Publications */

2012-10-24T16:25:57Z

Publications

2011-03-08T14:19:56Z

Cardix

2011-03-08T13:27:59Z

Use Cases, Examples

2011-03-01T17:20:04Z

Use Cases, Examples

2011-03-01T17:01:01Z

Tutorials

2011-03-01T16:55:28Z

Use Cases, Examples

2011-03-01T16:52:12Z

Use Cases, Examples

2011-03-01T16:49:18Z

Use Cases, Examples

2011-03-01T16:45:55Z

Use Cases, Examples

2011-03-01T16:44:38Z

Acknowledgment

@@ Line 159: / Line 159: @@
 The method is based on:
-* Y. Gao, A. Tannenbaum, R. Kikinis, ''Simultaneous Multi-Object Segmentation using Local Robust Statistics and Contour Interaction'', MICCAI 2010, Medical Computer Vision, Workshop on [[File:Rss.pdf|pdf]]
+* Yi Gao, Ron Kikinis, Sylvain Bouix, Martha Shenton, Allen Tannenbaum, ''A 3D Interactive Multi-object Segmentation Tool using Local Robust Statistics Driven Active Contours'', Medical Image Analysis, 2012, http://dx.doi.org/10.1016/j.media.2012.06.002
 ==Rons==
 [[File:RobustSeg.zip|example case]]

@@ Line 146: / Line 146: @@
 The testing image of this example is sub-sampled from the CARDIX data set from Orisix data set and can be downloaded at: [[File:RSS_CARDIX-sub2.nrrd|example image]]
 The label image is at: [[File:RSS_sub2_cardix_LVlabel.nrrd|left ventricle label seed image]]
-Parameters are: IH = 0.01, BS=0.1, Threshold= default(= 2)
+Parameters are: Approx vol limit 300mL, IH = 0.01, BS=0.1, Threshold= default(= 2)
 =Acknowledgment=

@@ Line 139: / Line 139: @@
 ===Use Cases, Examples===
 The testing image of this example can be downloaded at: [[File:RSS_Grayscale.nrrd|example image]]
-The label image is at: [[File:MORSS_Grayscale-multilabel.nrrd|multiple label seed image]]
+====Cardix====
 =Acknowledgment=

← Older revision		Revision as of 17:20, 1 March 2011
Line 142:		Line 142:

	The label image is at: [[File:MORSS_Grayscale-multilabel.nrrd\|multiple label seed image]]		The label image is at: [[File:MORSS_Grayscale-multilabel.nrrd\|multiple label seed image]]
−
−
−	~~Using the editing module, we draw seeded region in three slices:~~
−	{\|
−	~~\|[[Image:morss_label_1_crop.png\|thumb\|300px\|Seeds for white matter in one axial slice]]~~
−	~~\|[[Image:morss_label_2_crop.png\|thumb\|300px\|Seeds for tumor and ventricle]]~~
−	~~\|[[Image:morss_label_3_crop.png\|thumb\|300px\|Seeds for white matter in one sagittal slice]]~~
−	\|}
−
−	~~With Intensity Homogeneity set at 0.2, Smoothness at 0.05, and Number of Iterations at 1000, we get the following results:~~
−	{\|
−	~~\|[[Image:morss_seg1.png\|thumb\|300px\|Segmentation result, axial view]]~~
−	~~\|[[Image:morss_seg2.png\|thumb\|300px\|Segmentation result, sagittal view]]~~
−	~~\|[[Image:morss_seg3.png\|thumb\|300px\|Segmentation result, coronal view]]~~
−	\|}
−
−	~~In 3D, the relationship among the multiple objects can be clearly shown:~~
−	{\|
−	~~\|[[Image:morss_seg4.png\|thumb\|500px\|Segmentation result, 3D view from superior]]~~
−	~~\|[[Image:morss_seg5.png\|thumb\|500px\|Segmentation result, 3D view from right]]~~
−	\|}

	=Acknowledgment=		=Acknowledgment=

@@ Line 72: / Line 72: @@
 . Draw label map in Editing module
-In the editing module, select any drawing tool, for example the "Paint" tool circled in red. Draw some strokes in the target in one of the 2D views. In this example, we only freely draw the "S" shaped label circled in green.
+In the editing module, select any drawing tool, for example the "Paint" tool circled in red. Draw some strokes in the target in one of the 2D views. In this example, we only freely draw the "S" shaped label circled in green. The label image is available at: [[File:RSS_Grayscale-label.nrrd|Label image]]
 [[Image:RSS_editStep.png | Drawing label map for RSS| 700px]]

← Older revision		Revision as of 16:52, 1 March 2011
Line 139:		Line 139:

	===Use Cases, Examples===		===Use Cases, Examples===
		+	The testing image of this example can be downloaded at:
		+	The label image is at:
		+

	Using the editing module, we draw seeded region in three slices:		Using the editing module, we draw seeded region in three slices:

@@ Line 145: / Line 145: @@
 |[[Image:morss_label_2_crop.png|thumb|300px|Seeds for tumor and ventricle]]
 |[[Image:morss_label_3_crop.png|thumb|300px|Seeds for white matter in one sagittal slice]]
 |}

@@ Line 142: / Line 142: @@
 Using the editing module, we draw seeded region in three slices:
 {|
-|[[Image:morss_label_1_crop.png|thumb|280px|Seeds for white matter in one axial slice]]
+|[[Image:morss_label_1_crop.png|thumb|300px|Seeds for white matter in one axial slice]]
-|[[Image:morss_label_2_crop.png|thumb|280px|Seeds for tumor and ventricle]]
+|[[Image:morss_label_2_crop.png|thumb|300px|Seeds for tumor and ventricle]]
-|[[Image:morss_label_3_crop.png|thumb|280px|Seeds for white matter in one sagittal slice]]
+|[[Image:morss_label_3_crop.png|thumb|300px|Seeds for white matter in one sagittal slice]]
 |}
 =Acknowledgment=

@@ Line 149: / Line 149: @@
-===Acknowledgment===
+=Acknowledgment=
 This  work  was  supported  in  part  by  grants  from  NSF, AFOSR, ARO, as well as by a grant from
 NIH (NAC P41 RR-13218) through Brigham and Women’s