SDIWG:Action Items 20090529 - Revision history

Lysterp at 20:03, 29 May 2009

2009-05-29T20:03:24Z

Lysterp at 19:57, 29 May 2009

2009-05-29T19:57:58Z

Lysterp at 19:57, 29 May 2009

2009-05-29T19:57:14Z

Lysterp at 19:52, 29 May 2009

2009-05-29T19:52:18Z

Lysterp: Created page with 'Go back to top level of Resourcome working group discussion pages http://na-mic.org/Wiki/index.php/SDIWG:_NCBC_Resource_Yellow_Pages_and_Software_Ontologies '''Who''': Technical...'

2009-05-29T19:35:46Z

Created page with 'Go back to top level of Resourcome working group discussion pages http://na-mic.org/Wiki/index.php/SDIWG:_NCBC_Resource_Yellow_Pages_and_Software_Ontologies '''Who''': Technical...'

New page

Go back to top level of Resourcome working group discussion pages http://na-mic.org/Wiki/index.php/SDIWG:_NCBC_Resource_Yellow_Pages_and_Software_Ontologies

'''Who''': Technical Tiger Team:<br>
'''Background''': [[SDIWG:Action_Items_20090212| See meeting Notes of 02/12/2009]]

== Discussion and Current Status (2009-03-18): ==

'''Dial in''': Please call in on '''1.866.747.9489 passcode 4212569'''. Please be at a terminal and take your IE browser to https://webmeeting.nih.gov/r47348027/ and click on ‘enter as guest’ then type in your name and institution and click on ‘enter room’

*Agenda
**Review [[SDIWG:Action_Items_20090212| meeting Notes of 02/12/2009]]
**Go over latest updates on the tools
**Go over web site and plan for last changes before we go live with CTSA and NCBC (yes we will ask NCBCs to update their biositemaps)
**Plans for future of BRO and how NIF-BRO may (or hopefully will not negatively) impact our current release.
**Go over list of feature requests (below)

== Action Items (2009-03-18): ==

== Immediate Action Items ==

* <strike>Csongor: Update 'Center' as drop-down list [CTSA, NCBC]</strike> (done)
* <strike>Peter: Provide updated definitions for Center & Organization</strike> (done)
* <strike>Beth: Update www.ncbcs.org/biositmaps with updated definitions from Peter</strike> (done)
* <strike>Csongor: Update editor/browser with updated definitions from Peter</strike> (done)
* <strike>Beth: Create link to browser from "your last search found..."</strike> (done)
* <strike>Beth: Create CTSA skin in Query tool which uses CTSA logo, and passes "conf=ctsa" to browser</strike> (done: http://portal.ncibi.org/biositemaps/search/basic?conf=ctsa)
* <strike>Peter/Csongor: email Nancy & Harpreet at CTSA</strike> (done)

== Later Action Items ==

* Daniel: Create Deprecated class
* Csongor: Change CTSA skin to display the standard 'organization' and change the tool-tip to reference 'institution'
* Peter: NCBC Bioaitemap data update
* Beth/Csongor: Support for related_resource, related_activities, related_areas_of_research in search/editor/browser

== Feature Requests ==
* Develop, test, and install capability of synonyms for class names in BRO/Bioportal. This is a basic feature of ontological development, and is also related to the issues of provenance tracking and depracation (the latter of which is currently to be handled by assigning 'old' class names (and possibly synonyms) to a depracation bin. By formally allowing synonyms the BRO/Bioportal will be able to handle misspellings (in applications), resolution of collisions between different sides in a harmonization process, and just the usual need for multiple words to have the same meaning. This will also help in the process of alinging the lexicon with NIF. Aside from helping harmonization etc, this will also preserve the hierarchy in case of real synonyms. (Suggested by PLyster 20090218)
* Process for handling provenance which is lossless. Meaning: will enable users/consumers to know which epochs (lexicon and hierarchy) of BRO is applicable to a biositemaps.rdf. (Suggested by PLyster 20090218)
* Flexible extension to BIM (Information Model) in case an individual wants to create customized biositemaps, e.g., to display as web site (Suggested by PLyster 20090218)
* Extend Biositemaps API to support use of Biositemaps as exchange mechanism for information about resources (Suggested by PLyster 20080218)
* For some reason the site http://www.biositemaps.org/ does not work from my workstation at NIH. Any ideas? (Peter 20090317)

@@ Line 20: / Line 20: @@
 * Priority 1: Develop, test, and install capability of synonyms for class names in BRO/Bioportal.  This is a basic feature of ontological development, and is also related to the issues of provenance tracking and depracation (the latter of which is currently to be handled by assigning 'old' class names (and possibly synonyms) to a depracation bin. By formally allowing synonyms the BRO/Bioportal will be able to handle misspellings (in applications), resolution of collisions between different sides in a harmonization process, and just the usual need for multiple words to have the same meaning. This will also help in the process of alinging the lexicon with NIF. Aside from helping harmonization etc, this will also preserve the hierarchy in case of real synonyms. (Suggested by PLyster 20090218)
 * Priority 1: Flexible extension to BIM (Information Model) in case an individual wants to create customized biositemaps, e.g., to display as web site.  This will also help to make the Biositemaps less lossy. (Suggested by PLyster 20090218)
 * Priority 2: Process for handling provenance which is lossless. Meaning: will enable users/consumers to know which epochs (lexicon and hierarchy) of BRO is applicable to a biositemaps.rdf. (Suggested by PLyster 20090218)
 * Priority 2: Extend Biositemaps API to support use of Biositemaps as exchange mechanism for information about resources (Suggested by PLyster 20080218)

@@ Line 26: / Line 26: @@
 Biositemaps site http://www.biositemaps.org
-Current BRO 2.7 http://bioportal.bioontology.org/visualize/39977
+Current Biomedical Resource Ontology (BRO) 2.7 http://bioportal.bioontology.org/visualize/39977
 Official biositemaps editor http://biositemaps.bioontology.org/editor

← Older revision		Revision as of 19:57, 29 May 2009
Line 22:		Line 22:
	* Priority 2: Process for handling provenance which is lossless. Meaning: will enable users/consumers to know which epochs (lexicon and hierarchy) of BRO is applicable to a biositemaps.rdf. (Suggested by PLyster 20090218)		* Priority 2: Process for handling provenance which is lossless. Meaning: will enable users/consumers to know which epochs (lexicon and hierarchy) of BRO is applicable to a biositemaps.rdf. (Suggested by PLyster 20090218)
	* Priority 2: Extend Biositemaps API to support use of Biositemaps as exchange mechanism for information about resources (Suggested by PLyster 20080218)		* Priority 2: Extend Biositemaps API to support use of Biositemaps as exchange mechanism for information about resources (Suggested by PLyster 20080218)
		+
		+	== Compendium of Biositemaps-CTSA related web sites ==
		+	Biositemaps site http://www.biositemaps.org
		+
		+	Current BRO 2.7 http://bioportal.bioontology.org/visualize/39977
		+
		+	Official biositemaps editor http://biositemaps.bioontology.org/editor
		+
		+	Official biositemaps search http://portal.ncibi.org/biositemaps/search/basic
		+
		+
		+	CTSA-specific editor http://biositemaps.bioontology.org/editor/?conf=ctsa
		+
		+	CTSA-specific search http://portal.ncibi.org/biositemaps/search/basic?conf=ctsa
		+
		+	NCBC-specific editor http://biositemaps.bioontology.org/editor?conf=ncbc
		+
		+	How to publish biositemaps http://www.ncbcs.org/biositemaps/publish.html
		+
		+	Current registry http://www.ncbcs.org/biositemaps/biositemap.registry
		+
		+
		+	Neurolex Wiki http://neurolex.org/wiki/Main_Page
		+
		+	Neurolex Resource Type Hierarchy http://neurolex.org/wiki/Resource_Type_Hierarchy
		+
		+	Neurolex working directory https://wiki.neuinfo.org/xwiki/bin/view/Main/Revised+resource+descriptors
		+
		+	Neurolex Lexicon/Definitions http://neurolex.org/wiki/Resources_With_Definitions

@@ Line 2: / Line 2: @@
 '''Who''': Technical Tiger Team:<br>
-'''Background''': [[SDIWG:Action_Items_20090212| See meeting Notes of 02/12/2009]]
+'''Previous Entry in the thread:''': [[SDIWG:Action_Items_20090318| See meeting Notes of 03/18/2009]]
-== Discussion and Current Status (2009-03-18): ==
+== Discussion and Current Status (2009-05-29): ==
 '''Dial in''': Please call in on '''1.866.747.9489 passcode 4212569'''. Please be at a terminal and take your IE browser to https://webmeeting.nih.gov/r47348027/ and click on ‘enter as guest’ then type in your name and institution and click on ‘enter room’
 *Agenda
-**Review [[SDIWG:Action_Items_20090212| meeting Notes of 02/12/2009]]
+** There is no agenda here.  This page is now for keeping track of feature requests.
+== Action Items (2009-05-29): ==
 == Immediate Action Items ==
 == Later Action Items ==
 == Feature Requests ==
-* Develop, test, and install capability of synonyms for class names in BRO/Bioportal.  This is a basic feature of ontological development, and is also related to the issues of provenance tracking and depracation (the latter of which is currently to be handled by assigning 'old' class names (and possibly synonyms) to a depracation bin. By formally allowing synonyms the BRO/Bioportal will be able to handle misspellings (in applications), resolution of collisions between different sides in a harmonization process, and just the usual need for multiple words to have the same meaning. This will also help in the process of alinging the lexicon with NIF. Aside from helping harmonization etc, this will also preserve the hierarchy in case of real synonyms. (Suggested by PLyster 20090218)
+* Priority 1: Develop, test, and install capability of synonyms for class names in BRO/Bioportal.  This is a basic feature of ontological development, and is also related to the issues of provenance tracking and depracation (the latter of which is currently to be handled by assigning 'old' class names (and possibly synonyms) to a depracation bin. By formally allowing synonyms the BRO/Bioportal will be able to handle misspellings (in applications), resolution of collisions between different sides in a harmonization process, and just the usual need for multiple words to have the same meaning. This will also help in the process of alinging the lexicon with NIF. Aside from helping harmonization etc, this will also preserve the hierarchy in case of real synonyms. (Suggested by PLyster 20090218)
-* Process for handling provenance which is lossless. Meaning: will enable users/consumers to know which epochs (lexicon and hierarchy) of BRO is applicable to a biositemaps.rdf. (Suggested by PLyster 20090218)
+* Priority 1: Flexible extension to BIM (Information Model) in case an individual wants to create customized biositemaps, e.g., to display as web site.  This will also help to make the Biositemaps less lossy. (Suggested by PLyster 20090218)
-* Flexible extension to BIM (Information Model) in case an individual wants to create customized biositemaps, e.g., to display as web site (Suggested by PLyster 20090218)
+* Priority 2: Process for handling provenance which is lossless. Meaning: will enable users/consumers to know which epochs (lexicon and hierarchy) of BRO is applicable to a biositemaps.rdf. (Suggested by PLyster 20090218)
-* Extend Biositemaps API to support use of Biositemaps as exchange mechanism for information about resources (Suggested by PLyster 20080218)
+* Priority 2: Extend Biositemaps API to support use of Biositemaps as exchange mechanism for information about resources (Suggested by PLyster 20080218)