SDIWG:Meeting Minutes 20070216 - Revision history

Lysterp at 22:44, 26 March 2007

2007-03-26T22:44:09Z

Aris: /* Action Items */

2007-02-19T20:48:19Z

Action Items

Aris: /* Action Items */

2007-02-19T20:47:47Z

Action Items

Aris: /* Minutes */

2007-02-19T20:47:04Z

Minutes

Lysterp at 22:08, 14 February 2007

2007-02-14T22:08:42Z

Ivo: /* TCon Agenda */

2007-02-14T17:50:52Z

TCon Agenda

Ivo: /* TCon Agenda */

2007-02-13T23:33:46Z

TCon Agenda

Ivo: /* TCon Agenda */

2007-02-13T23:32:51Z

TCon Agenda

Ivo at 23:28, 13 February 2007

2007-02-13T23:28:09Z

Ivo: /* Notes */

2007-02-13T23:27:19Z

Notes

@@ Line 5: / Line 5: @@
 ===Notes===
 ''Friday, February 16, 2007: 2:30 -- 3:30 PM EST''<br>
-''Please contact Peter Lyster for information lysterp@mail.nih.gov''<br>
+''Please contact Peter Lyster for information [mailto:lysterp@mail.nih.gov Peter Lyster]''<br>
 ''[http://na-mic.org/Wiki/index.php/SDIWG:Software_Engineering_Body_of_Knowledge_Across_NCBC_Biocomputing_Centers SDIWG Meetings Page]''<br>

@@ Line 61: / Line 61: @@
 === Action Items ===
-* Dan Rubin to point our for the Ontology SIG the key imaging/neuroscience ontologies.
+* Dan Rubin to point our for the Scientific Ontologies SIG the key imaging/neuroscience ontologies.
-* Ontology SIG to produce use cases describing practical uses of ontologies/vocabularies.
+* Ontologies SIG to produce use cases describing practical uses of ontologies/vocabularies.
 * Peter Lyster (or/and others?) to bring up as an agenda item to the NCBC project team meeting the issue of hosting the Yellow Pages database centrally within NIH.
 * Peter Lyster to ask John Whitmarsh to communicate to the PIs the status of plans for the NCBC evaluation program.

← Older revision		Revision as of 20:47, 19 February 2007
Line 61:		Line 61:

	=== Action Items ===		=== Action Items ===
		+	* Dan Rubin to point our for the Ontology SIG the key imaging/neuroscience ontologies.
		+	* Ontology SIG to produce use cases describing practical uses of ontologies/vocabularies.
		+	* Peter Lyster (or/and others?) to bring up as an agenda item to the NCBC project team meeting the issue of hosting the Yellow Pages database centrally within NIH.
		+	* Peter Lyster to ask John Whitmarsh to communicate to the PIs the status of plans for the NCBC evaluation program.

@@ Line 42: / Line 42: @@
 ** '''[[SDIWG:_NCBC_Scientific_Ontologies|Scientific Ontologies]]'''
 ** '''[[SDIWG:_NCBC_Systems_Biology|Applications of Systems Biology, Modeling, and Analysis]]'''
 === Attendees ===

@@ Line 46: / Line 46: @@
 * Sherman, Lyster, Dinov (CCB/UCLA), Lorensen, Michael Montegut (NCBO project mgr), Weymouth, Floratos, Jennie Larkin (NHLBI), Zak & Susanne, Jenkins (NLM), Vivien Bonai, Athey, Kennedy, Mike Mendis, Karen Skinner/NIDA, Musen, Chris Mungall (NCBO), German Cavelier (NIMH), Suzanna Lewis
-* Note-taker: [Suggested order of note takers for future meetings: Floratos (this one); Rubin; Jags; Dinov; Chueh; Sherman; Lorensen]
+* Note-taker: [Suggested order of note takers for future meetings: Floratos (this one); Rubin; Jags; Dinov; Chueh; Sherman; Schroeder]
 === Action Items ===

@@ Line 15: / Line 15: @@
 * Progress in three working groups
 ** '''[[SDIWG:_NCBC_Resource_Yellow_Pages_and_Software_Ontologies|Yellow Pages and Resourceome]]''' (Ivo Dinov, Daniel Rubin, Bill Lorensen, Jonathan Dugan, 15 min)
 *** Past Progress
@@ Line 29: / Line 31: @@
 **** Each Center should ensure that they have [[SDIWG:NCBC_Software_Classification|6-12 SW Resources described according to these templates]]
 **** Test, comment and revise iTools. How does it compare with other similar efforts?
 ** '''[[SDIWG:_NCBC_Systems_Biology|Applications of Systems Biology, Modeling, and Analysis]]''' (Aris Floratos, Brian Athey, Russ Altman, 15 min)
 *** TBD

@@ Line 30: / Line 30: @@
 **** Test, comment and revise iTools. How does it compare with other similar efforts?
 ** '''[[SDIWG:_NCBC_Scientific_Ontologies|Scientific Ontologies]]''' (Zak Kohane, Mark Musen, and Suzi Lewis, 15 min)
 ** '''[[SDIWG:_NCBC_Systems_Biology|Applications of Systems Biology, Modeling, and Analysis]]''' (Aris Floratos, Brian Athey, Russ Altman, 15 min)
+*** TBD
 === Minutes ===

@@ Line 16: / Line 16: @@
 * Progress in three working groups
 ** '''[[SDIWG:_NCBC_Resource_Yellow_Pages_and_Software_Ontologies|Yellow Pages and Resourceome]]''' (Ivo Dinov, Daniel Rubin, Bill Lorensen, Jonathan Dugan, 15 min)
-*** Yellow-pages (10 min)
+*** Past Progress
-*** Proposed set of '''[http://www.loni.ucla.edu/twiki/bin/view/CCB/NCBC_ToolIntegration_XMLtology_Meeting_071806_RequiredFields Required/Minimal]''' Resource Description Fields (5 min)
+**** [http://www.loni.ucla.edu/twiki/bin/view/CCB/NCBC_ToolIntegration_XMLtology_2006_OtherArchives Other Attempts to provide archives of SW and tool resources]
-*** [http://www.loni.ucla.edu/twiki/bin/view/CCB/NCBC_ToolIntegration_XMLtology_Meeting_071806_ToolSpecificFields '''Optional''' and '''Resource-specific''' description fields] (5 min)
+**** Proposed set of '''[http://www.loni.ucla.edu/twiki/bin/view/CCB/NCBC_ToolIntegration_XMLtology_Meeting_071806_RequiredFields Required/Minimal]''' Resource Description Fields
-*** [http://bioontology.org/projects/ontologies/SoftwareOntology/ Current Ontological Description of the NCBC Tool Yellow-Pages]
+**** [http://www.loni.ucla.edu/twiki/bin/view/CCB/NCBC_ToolIntegration_XMLtology_Meeting_071806_ToolSpecificFields '''Optional''' and '''Resource-specific''' description fields]
-*** [http://www.loni.ucla.edu/twiki/bin/view/CCB/NCBC_ToolIntegration_XMLtology_Meeting_103106_ResourceDef What are the NCBC Resources]? (Downloadable locally-executable SW tools, Web-services (including DBs))?
+**** [http://bioontology.org/projects/ontologies/SoftwareOntology/ Current Ontological Description of the NCBC Tool Yellow-Pages]
-*** Has each center [[SDIWG:NCBC_Software_Classification|described 3-5 resources]]? (2 min)
+**** [http://www.loni.ucla.edu/twiki/bin/view/CCB/NCBC_ToolIntegration_XMLtology_Meeting_103106_ResourceDef Types of CompBio Resources]?
-*** Begin to think of integration of distributed NCBC Resources (''ala'' [http://www.loni.ucla.edu/twiki/bin/view/CCB/NCBC_ToolIntegration_XMLtology_2006 XML Resource-Utilization Description, e.g., I/O/Server/Settings/Etc.]).
+**** [[SDIWG:NCBC_Software_Classification | Center described 3-5 resources]]?
-*** NCBC '''''[http://www.loni.ucla.edu/twiki/bin/view/CCB/NCBC_ToolIntegration_iTools iTools]'''''
+*** Status of NCBC '''''[http://www.loni.ucla.edu/twiki/bin/view/CCB/NCBC_ToolIntegration_iTools iTools]'''''
 **** V1 (v 0.1, 10/12/06)
 **** V4 (v 0.4, 02/13/07)
 *** Sugested Action Items for the YPR WG:
 **** Each Center should ensure that they have [[SDIWG:NCBC_Software_Classification|6-12 SW Resources described according to these templates]]
 **** Test, comment and revise iTools. How does it compare with other similar efforts?