SDIWG:Meeting Minutes 20100528 - Revision history

Grundlett: Text replacement - "[http://www.na-mic.org/Wiki/images/" to "[https://na-mic.org/w/images/"

2017-07-10T18:27:07Z

Text replacement - "[http://www.na-mic.org/Wiki/images/" to "[https://na-mic.org/w/images/"

Lysterp at 21:09, 28 May 2010

2010-05-28T21:09:07Z

Lysterp at 21:08, 28 May 2010

2010-05-28T21:08:05Z

Ivo: /* Minutes */

2010-05-28T19:12:18Z

Minutes

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2010-05-28T19:11:21Z

Minutes

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2010-05-28T19:10:02Z

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2010-05-28T19:09:26Z

Minutes

Lysterp at 19:06, 28 May 2010

2010-05-28T19:06:06Z

Ivo: /* Minutes */ added some notes

2010-05-28T18:46:38Z

Minutes: added some notes

Lysterp at 17:29, 28 May 2010

2010-05-28T17:29:35Z

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 *Status check on '''working groups''':
 **[http://www.biositemaps.org Biositemaps] is a technology to address (i) describing, (ii) locating, (ii) querying, (iii) composing or combining, and (iv) navigating/mining biomedical resources. The underlying technology for Biositemaps is the [http://bioportal.bioontology.org/visualize/40656 Biomedical Resource Ontology (BRO) V3] and [http://biositemaps.bioontology.org/editor/ Information Model (IM)] which is encapsulated in the Biositemaps Editor.  If you are interested, send [mailto:lysterp@mail.nih.gov Peter Lyster] a request for a copy of a paper on Biositemaps and BRO that was recently submitted with lead author Jessie Tennenbaum. Also, please try out the new query tool: [http://www.biositemaps.org/rds Resource Discovery System (RDS)].  You can find the NCBC resources by selecting the "Resource Program" tab and then selecting 'NCBC'.
-*** ([http://www.loni.ucla.edu/~dinov Ivo Dinov]) [http://www.na-mic.org/Wiki/images/9/96/CCB_Supplement_Biositemaps_Pipeline_Report_2010.pdf Biositemaps.RDF Extension facilitating resource execution, invocation, input/output and process control, and interoperability].
+*** ([http://www.loni.ucla.edu/~dinov Ivo Dinov]) [https://na-mic.org/w/images/9/96/CCB_Supplement_Biositemaps_Pipeline_Report_2010.pdf Biositemaps.RDF Extension facilitating resource execution, invocation, input/output and process control, and interoperability].
 **** Example: CCB Biositemap.RDF
 ***** [http://www.loni.ucla.edu/download/iTools/biositemap_NCBC_CCB.rdf Original (Standard RDF)]
-***** [http://www.na-mic.org/Wiki/images/e/e8/Biositemap_NCBC_CCB_PL_update021610.rdf Extended Biositemap_NCBC_CCB_PL_update021610.rdf]
+***** [https://na-mic.org/w/images/e/e8/Biositemap_NCBC_CCB_PL_update021610.rdf Extended Biositemap_NCBC_CCB_PL_update021610.rdf]
-***** [http://www.na-mic.org/Wiki/images/1/16/Biositemap_NCBC_CCB_PL_update021610_ByRef.rdf Extended Biositemap_NCBC_CCB_PL_update021610_ByRef.rdf] (scalable by-reference version).
+***** [https://na-mic.org/w/images/1/16/Biositemap_NCBC_CCB_PL_update021610_ByRef.rdf Extended Biositemap_NCBC_CCB_PL_update021610_ByRef.rdf] (scalable by-reference version).
-**** Example Pipeline workflows ([http://www.na-mic.org/Wiki/images/3/3b/ND_WaveletTransform_WAIR.pipe.txt ND_WaveletTransform_WAIR.pipe], [http://www.na-mic.org/Wiki/images/1/12/ShapeTransform.pipe.txt ShapeTransform.pipe], [http://www.na-mic.org/Wiki/images/d/db/ShapeDistance.pipe.txt ShapeDistance.pipe]).
+**** Example Pipeline workflows ([https://na-mic.org/w/images/3/3b/ND_WaveletTransform_WAIR.pipe.txt ND_WaveletTransform_WAIR.pipe], [https://na-mic.org/w/images/1/12/ShapeTransform.pipe.txt ShapeTransform.pipe], [https://na-mic.org/w/images/d/db/ShapeDistance.pipe.txt ShapeDistance.pipe]).
 **** [http://pipeline.loni.ucla.edu/support/xml-overview/ Pipeline XML Invocation Protocol].
 **** [http://www.loni.ucla.edu/twiki/bin/view/CCB/ITools_BiositemapsPipelineWorkflows See also this page].

@@ Line 14: / Line 14: @@
 *Minutes from the last SDIWG tcon [[SDIWG:Meeting_Minutes_20100219|February 19, 2010]] (5 min)
 *Status check on '''working groups''':
-**[http://www.biositemaps.org Biositemaps] is a technology to address (i) describing, (ii) locating, (ii) querying, (iii) composing or combining, and (iv) navigating/mining biomedical resources. The underlying technology for Biositemaps is the [http://bioportal.bioontology.org/visualize/40656 Biomedical Resource Ontology (BRO) V3] and [http://biositemaps.bioontology.org/editor/ Information Model (IM)] which is encapsulated in the Biositemaps Editor.  If you are interested, send Peter Lyster (lysterp@mail.nih.gov) a request for a copy of a paper on Biositemaps and BRO that was recently submitted with lead author Jessie Tennenbaum. Also, please try out the new query tool: [http://www.biositemaps.org/rds Resource Discovery System (RDS)].  You can find the NCBC resources by selecting the "Resource Program" tab and then selecting 'NCBC'.
+**[http://www.biositemaps.org Biositemaps] is a technology to address (i) describing, (ii) locating, (ii) querying, (iii) composing or combining, and (iv) navigating/mining biomedical resources. The underlying technology for Biositemaps is the [http://bioportal.bioontology.org/visualize/40656 Biomedical Resource Ontology (BRO) V3] and [http://biositemaps.bioontology.org/editor/ Information Model (IM)] which is encapsulated in the Biositemaps Editor.  If you are interested, send [mailto:lysterp@mail.nih.gov Peter Lyster] a request for a copy of a paper on Biositemaps and BRO that was recently submitted with lead author Jessie Tennenbaum. Also, please try out the new query tool: [http://www.biositemaps.org/rds Resource Discovery System (RDS)].  You can find the NCBC resources by selecting the "Resource Program" tab and then selecting 'NCBC'.
 *** ([http://www.loni.ucla.edu/~dinov Ivo Dinov]) [http://www.na-mic.org/Wiki/images/9/96/CCB_Supplement_Biositemaps_Pipeline_Report_2010.pdf Biositemaps.RDF Extension facilitating resource execution, invocation, input/output and process control, and interoperability].
 **** Example: CCB Biositemap.RDF

@@ Line 14: / Line 14: @@
 *Minutes from the last SDIWG tcon [[SDIWG:Meeting_Minutes_20100219|February 19, 2010]] (5 min)
 *Status check on '''working groups''':
-**[http://www.biositemaps.org Biositemaps] is a technology to address (i) describing, (ii) locating, (ii) querying, (iii) composing or combining, and (iv) navigating/mining biomedical resources. The underlying technology for Biositemaps is the [http://bioportal.bioontology.org/visualize/40656 Biomedical Resource Ontology (BRO) V3] and [http://biositemaps.bioontology.org/editor/ Information Model (IM)] which is encapsulated in the Biositemaps Editor.  [http://www.na-mic.org/Wiki/images/a/ac/Biositemaps_and_BRO_JBI-09-2691.pdf Here is the text of a paper on Biositemaps and BRO that was recently submitted with lead author Jessie Tennenbaum.] Also, please try out the new query tool: [http://www.biositemaps.org/rds Resource Discovery System (RDS)].  You can find the NCBC resources by selecting the "Resource Program" tab and then selecting 'NCBC'.
+**[http://www.biositemaps.org Biositemaps] is a technology to address (i) describing, (ii) locating, (ii) querying, (iii) composing or combining, and (iv) navigating/mining biomedical resources. The underlying technology for Biositemaps is the [http://bioportal.bioontology.org/visualize/40656 Biomedical Resource Ontology (BRO) V3] and [http://biositemaps.bioontology.org/editor/ Information Model (IM)] which is encapsulated in the Biositemaps Editor.  If you are interested, send Peter Lyster (lysterp@mail.nih.gov) a request for a copy of a paper on Biositemaps and BRO that was recently submitted with lead author Jessie Tennenbaum. Also, please try out the new query tool: [http://www.biositemaps.org/rds Resource Discovery System (RDS)].  You can find the NCBC resources by selecting the "Resource Program" tab and then selecting 'NCBC'.
 *** ([http://www.loni.ucla.edu/~dinov Ivo Dinov]) [http://www.na-mic.org/Wiki/images/9/96/CCB_Supplement_Biositemaps_Pipeline_Report_2010.pdf Biositemaps.RDF Extension facilitating resource execution, invocation, input/output and process control, and interoperability].
 **** Example: CCB Biositemap.RDF

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 * '''Note taker''': [Suggested order of note takers for future meetings:'''Dinov (This one)''', Murphy (Next one), Ku, Schroeder, Floratos, Rubenson, Jags]
 * Review of [[SDIWG:Meeting_Minutes_20100219|February 19, 2010 Minutes]]
-* Attendees: David Rubenson, Ivo Dinov, Karen Skinner, Susanne Churchill, Gil Omen, Trish Whetzel, Will Schroeder, Zohara Cohen, Peter Lyster, Jeannette Schmidt, Zak Kohane.
+* Attendees: David Rubenson, Ivo Dinov, Karen Skinner, Susanne Churchill, Gil Omenn, Trish Whetzel, Will Schroeder, Zohara Cohen, Peter Lyster, Jeannette Schmidt, Zak Kohane.
 * Peter/Zohara - [http://wiki.simtk.org/ncbcdisseminate/ dissemination efforts] / [http://www.ncbcs.org/cal.html NCBC Calendar]; [http://www.ncbcs.org/ NCBC web-page], [http://www.ncbcs.org/dbp_interactions.html DBP interactions] (access-stats, maps). How useful/used is the NCBC Calendar? Possible to add NCBC-Cal to Google/Personal Calendars.

@@ Line 34: / Line 34: @@
 * '''Note taker''': [Suggested order of note takers for future meetings:'''Dinov (This one)''', Murphy (Next one), Ku, Schroeder, Floratos, Rubenson, Jags]
 * Review of [[SDIWG:Meeting_Minutes_20100219|February 19, 2010 Minutes]]
-* Attendees: David Rubenson, Ivo Dinov, Karen Skinner, Susanne Churchill, Gil Omen, Trish Whetzel, Will Schroeder, Zohara Cohen, Peter Lyster, Jeannette Schmidt.
+* Attendees: David Rubenson, Ivo Dinov, Karen Skinner, Susanne Churchill, Gil Omen, Trish Whetzel, Will Schroeder, Zohara Cohen, Peter Lyster, Jeannette Schmidt, Zak Kohane.
 * Peter/Zohara - [http://wiki.simtk.org/ncbcdisseminate/ dissemination efforts] / [http://www.ncbcs.org/cal.html NCBC Calendar]; [http://www.ncbcs.org/ NCBC web-page], [http://www.ncbcs.org/dbp_interactions.html DBP interactions] (access-stats, maps). How useful/used is the NCBC Calendar? Possible to add NCBC-Cal to Google/Personal Calendars.

@@ Line 34: / Line 34: @@
 * '''Note taker''': [Suggested order of note takers for future meetings:'''Dinov (This one)''', Murphy (Next one), Ku, Schroeder, Floratos, Rubenson, Jags]
 * Review of [[SDIWG:Meeting_Minutes_20100219|February 19, 2010 Minutes]]
-* Attendees: David Rubenson, Ivo Dinov, Karen Skinner, Susanne Churchill, Gil Omen, Trish Whetzel, Will Schroeder, Zohara Cohen, Peter Lyster.
+* Attendees: David Rubenson, Ivo Dinov, Karen Skinner, Susanne Churchill, Gil Omen, Trish Whetzel, Will Schroeder, Zohara Cohen, Peter Lister, Jeannette .
 * Peter/Zohara - [http://wiki.simtk.org/ncbcdisseminate/ dissemination efforts] / [http://www.ncbcs.org/cal.html NCBC Calendar]; [http://www.ncbcs.org/ NCBC web-page], [http://www.ncbcs.org/dbp_interactions.html DBP interactions] (access-stats, maps). How useful/used is the NCBC Calendar? Possible to add NCBC-Cal to Google/Personal Calendars.
@@ Line 43: / Line 43: @@
 * Peter release of the [http://www.biositemaps.org/rds RDS (Resource Discovery System)].
 * CTSA/Biositemaps WG continues to make progress. Released RDS V.2?
-* Trish: latest efforts on [ BRO]. NCBC/CTSA collab - request from Pitt to include new regulatory branch - continually updated. Need to continue discussions on:
+* Trish: latest efforts on [http://bioportal.bioontology.org/visualize/40656 BRO 3.1]. NCBC/CTSA collab - request from Pitt to include new regulatory branch - continually updated. Need to continue discussions on:
 ** Update existing Biositemaps.RDF files and account for deprecated RDF constructs. Auto updates?
 ** Extending the IM (Information model) to allow tool interoperability and comp-tool integration.
 ===Action Items===
 * TBD