SDIWG:NCBC Software Classification NCIBI Examples - Revision history

Weymouth: /* Edgewarp */

2007-03-06T18:22:34Z

Edgewarp

Kskinner at 07:36, 6 March 2007

2007-03-06T07:36:35Z

Kskinner at 07:34, 6 March 2007

2007-03-06T07:34:56Z

Kskinner at 21:57, 5 March 2007

2007-03-05T21:57:35Z

Kskinner at 21:53, 5 March 2007

2007-03-05T21:53:07Z

Kskinner at 21:44, 5 March 2007

2007-03-05T21:44:21Z

Kskinner at 21:36, 5 March 2007

2007-03-05T21:36:03Z

Kskinner at 21:24, 5 March 2007

2007-03-05T21:24:13Z

Ivo at 20:09, 16 February 2007

2007-02-16T20:09:17Z

Ivo at 20:07, 16 February 2007

2007-02-16T20:07:29Z

← Older revision		Revision as of 18:22, 6 March 2007
Line 3:		Line 3:
	== NCIBI Software Classification & Metadata Examples ==		== NCIBI Software Classification & Metadata Examples ==

−	~~=== Edgewarp ===~~

−	* NCBC [http://bioontology.org/ontologies/SoftwareOntology/ Ontology Classification]<nowiki>: Modeling --> Algorithms --> Image Processing --> Registration </nowiki>
−	* Description: Edgewarp 3D is a sophisticated workstation package for manipulation of 2D and 3D biomedical images and related data structures by a combination of landmark location, thin-plate spline, and image unwarping and averaging.
−	* Data Input: TBD
−	* Data Output: TBD
−	* Implementation Language: C and C++ code and makes extensive use of SGI's OpenGL graphics interface. Communication with the user is by textual and graphical interfaces managed using TCL/TK.
−	* Platforms tested: SGI/IRIX
−	* Version, Date, Stage: 3.2.7
−	* Authors: Fred Bookstein
−	* URL: http://vhp.med.umich.edu/edgewarpss.html

	=== MiMi:Michigan Molecular Interactions ===		=== MiMi:Michigan Molecular Interactions ===

@@ Line 25: / Line 25: @@
 * Authors: Magesh Jayapandian, Adriane Chapman, V. Glenn Tarcea, Cong Yu, Aaron Elkiss, Angela Ianni, Bin Liu, Arnab Nandi, Carlos Santos, Philip Andrews, Brian Athey, David States and H. V. Jagadish
 * URL: http://mimi.ncibi.org/MiMI/home.jsp
-* Keywords: data integration
+* Keywords: data integration, protein interactions

← Older revision		Revision as of 07:34, 6 March 2007
Line 25:		Line 25:
	* Authors: Magesh Jayapandian, Adriane Chapman, V. Glenn Tarcea, Cong Yu, Aaron Elkiss, Angela Ianni, Bin Liu, Arnab Nandi, Carlos Santos, Philip Andrews, Brian Athey, David States and H. V. Jagadish		* Authors: Magesh Jayapandian, Adriane Chapman, V. Glenn Tarcea, Cong Yu, Aaron Elkiss, Angela Ianni, Bin Liu, Arnab Nandi, Carlos Santos, Philip Andrews, Brian Athey, David States and H. V. Jagadish
	* URL: http://mimi.ncibi.org/MiMI/home.jsp		* URL: http://mimi.ncibi.org/MiMI/home.jsp
		+	* Keywords: data integration

@@ Line 15: / Line 15: @@
 * URL: http://vhp.med.umich.edu/edgewarpss.html
-=== MiMi Michigan Molecular Interactions(MiMI)===
+=== MiMi:Michigan Molecular Interactions ===
 * NCBC [http://bioontology.org/ontologies/SoftwareOntology/ Ontology Classification]<nowiki>: Biotool --> Data Management -->Information retrieval, traversal and querying  </nowiki>

@@ Line 15: / Line 15: @@
 * URL: http://vhp.med.umich.edu/edgewarpss.html
-=== Michigan Molecular Interactions(MiMI)===
+=== MiMi Michigan Molecular Interactions(MiMI)===
 * NCBC [http://bioontology.org/ontologies/SoftwareOntology/ Ontology Classification]<nowiki>: Biotool --> Data Management -->Information retrieval, traversal and querying  </nowiki>

← Older revision		Revision as of 21:44, 5 March 2007
Line 24:		Line 24:
	* Platforms tested: Web and Cytoscape Browsers		* Platforms tested: Web and Cytoscape Browsers
	* Authors: Magesh Jayapandian, Adriane Chapman, V. Glenn Tarcea, Cong Yu, Aaron Elkiss, Angela Ianni, Bin Liu, Arnab Nandi, Carlos Santos, Philip Andrews, Brian Athey, David States and H. V. Jagadish		* Authors: Magesh Jayapandian, Adriane Chapman, V. Glenn Tarcea, Cong Yu, Aaron Elkiss, Angela Ianni, Bin Liu, Arnab Nandi, Carlos Santos, Philip Andrews, Brian Athey, David States and H. V. Jagadish
		+	* URL: http://mimi.ncibi.org/MiMI/home.jsp

@@ Line 17: / Line 17: @@
 === Michigan Molecular Interactions(MiMI)===
-* NCBC [http://bioontology.org/ontologies/SoftwareOntology/ Ontology Classification]<nowiki>: Modeling --> Algorithms --> Image Processing --> Registration </nowiki>
+* NCBC [http://bioontology.org/ontologies/SoftwareOntology/ Ontology Classification]<nowiki>: Biotool --> Data Management -->Information retrieval, traversal and querying  </nowiki>
-* Description: Edgewarp 3D is a sophisticated workstation package for manipulation of 2D and 3D biomedical images and related data structures by a combination of landmark location, thin-plate spline, and image unwarping and averaging.
+* Description: MiMI gathers data from well-known protein interaction databases and merges the information. Since these datasets often contain contradictory information, the merge is performed in such a way that all information is retained. A provenance model has been developed that tracks where each piece of data came from, and what processes have been performed upon it. A simple yet powerful user interface aids users in their queries. Thus, MiMI allows scientists to query all data, whether corroborative, or contradictory, and specify which sources to utilize
-* Data Input: TBD
+* Data Input: MQuery
-* Data Output: TBD
+* Data Output: XML using MiMI's internal schema, PSI-MI format (version 2.5) and plain text
-* Implementation Language: C and C++ code and makes extensive use of SGI's OpenGL graphics interface. Communication with the user is by textual and graphical interfaces managed using TCL/TK.
+* Implementation Language: Timber native XML database
-* Platforms tested: SGI/IRIX
+* Platforms tested: Web and Cytoscape Browsers
-* Version, Date, Stage: 3.2.7
+* Authors: Magesh Jayapandian, Adriane Chapman, V. Glenn Tarcea, Cong Yu, Aaron Elkiss, Angela Ianni, Bin Liu, Arnab Nandi, Carlos Santos, Philip Andrews, Brian Athey, David States and H. V. Jagadish

← Older revision		Revision as of 21:24, 5 March 2007
Line 14:		Line 14:
	* Authors: Fred Bookstein		* Authors: Fred Bookstein
	* URL: http://vhp.med.umich.edu/edgewarpss.html		* URL: http://vhp.med.umich.edu/edgewarpss.html
		+
		+	=== Michigan Molecular Interactions(MiMI)===
		+
		+	* NCBC [http://bioontology.org/ontologies/SoftwareOntology/ Ontology Classification]<nowiki>: Modeling --> Algorithms --> Image Processing --> Registration </nowiki>
		+	* Description: Edgewarp 3D is a sophisticated workstation package for manipulation of 2D and 3D biomedical images and related data structures by a combination of landmark location, thin-plate spline, and image unwarping and averaging.
		+	* Data Input: TBD
		+	* Data Output: TBD
		+	* Implementation Language: C and C++ code and makes extensive use of SGI's OpenGL graphics interface. Communication with the user is by textual and graphical interfaces managed using TCL/TK.
		+	* Platforms tested: SGI/IRIX
		+	* Version, Date, Stage: 3.2.7
		+	* Authors: Fred Bookstein
		+	* URL: http://mimi.ncibi.org/MiMI/home.jsp