SPIE 2013 Course Preparation - Revision history

Akaiser at 22:29, 8 February 2013

2013-02-08T22:29:44Z

Akaiser at 16:02, 31 January 2013

2013-01-31T16:02:10Z

Akaiser at 16:33, 30 January 2013

2013-01-30T16:33:03Z

Akaiser at 04:01, 30 January 2013

2013-01-30T04:01:39Z

Akaiser at 22:16, 25 January 2013

2013-01-25T22:16:22Z

Akaiser at 21:44, 25 January 2013

2013-01-25T21:44:27Z

Spujol: Created page with '* Copy datasets and software on memory sticks * Update slides'

2013-01-11T00:27:24Z

Created page with '* Copy datasets and software on memory sticks * Update slides'

New page

* Copy datasets and software on memory sticks
* Update slides

← Older revision		Revision as of 22:29, 8 February 2013
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	* DTIAtlasBuilder Tutorial: http://www.nitrc.org/docman/view.php/636/1189/DTIAtlasBuilder_Tutorial.pdf		* DTIAtlasBuilder Tutorial: http://www.nitrc.org/docman/view.php/636/1189/DTIAtlasBuilder_Tutorial.pdf
	* DTIAtlasBuilder Tutorial (Editable pptx version): http://www.nitrc.org/docman/view.php/636/1219/DTIAtlasBuilder_Tutorial.pptx		* DTIAtlasBuilder Tutorial (Editable pptx version): http://www.nitrc.org/docman/view.php/636/1219/DTIAtlasBuilder_Tutorial.pptx
		+
		+
		+	* Please find in this table the status concerning all the extensions:
		+
		+	{\| class="wikitable sortable" border="1"
		+	\|-
		+	! scope="col" \| Tool
		+	! scope="col" \| Platform
		+	! scope="col" \| Visible in Extension Manager
		+	! scope="col" \| Visible in Module List
		+	! scope="col" \| GUI displaid from Slicer
		+	! scope="col" \| Usable*
		+	\|-
		+	\| DTIAtlasBuilder \|\| Windows \|\| Y \|\| Y \|\| N \|\| N
		+	\|-
		+	\| DTIAtlasBuilder \|\| Mac \|\| Y \|\| Y \|\| Y \|\| N
		+	\|-
		+	\| DTIAtlasBuilder \|\| Linux \|\| Y \|\| Y \|\| Y \|\| Y
		+	\|-
		+	\| DTIAtlasFiberAnalyzer \|\| Windows \|\| Y \|\| Y \|\| N \|\| Y
		+	\|-
		+	\| DTIAtlasFiberAnalyzer \|\| Mac \|\| Y \|\| Y \|\| Y \|\| Y
		+	\|-
		+	\| DTIAtlasFiberAnalyzer \|\| Linux \|\| Y \|\| Y \|\| Y \|\| Y
		+	\|-
		+	\| DTIPrep \|\| Windows \|\| Y \|\| N \|\| N/A \|\| Y
		+	\|-
		+	\| DTIPrep \|\| Mac \|\| Y \|\| ? \|\| ? \|\| Y
		+	\|-
		+	\| DTIPrep \|\| Linux \|\| Y \|\| N \|\| N/A \|\| Y
		+	\|-
		+	\| DTIProcess \|\| Windows \|\| Y \|\| Y \|\| N/A \|\| Y
		+	\|-
		+	\| DTIProcess \|\| Mac \|\| Y \|\| Y \|\| N/A \|\| Y
		+	\|-
		+	\| DTIProcess \|\| Linux \|\| Y \|\| Y \|\| N/A \|\| Y
		+	\|-
		+	\| FiberViewerLight \|\| Windows \|\| Y \|\| Y \|\| N \|\| Y
		+	\|-
		+	\| FiberViewerLight \|\| Mac \|\| Y \|\| Y \|\| Y \|\| Y
		+	\|-
		+	\| FiberViewerLight \|\| Linux \|\| Y \|\| Y \|\| Y \|\| Y
		+	\|}
		+	* From within Slicer or in command line, depending on the software.
		+
		+	Please see below for special instructions:
		+
		+	* On Windows, some of the tools that appear in the module list fail to load their user interfaces.
		+	It possible to launch them by running these commands in the windows "cmd.exe" terminal:
		+	"C:\Program Files\Slicer 4.2.2-1\Slicer.exe" --launch C:\Users\<username>\AppData\Roaming\NA-MIC\Extensions-21513\DTIPrep\lib\Slicer-4.2\cli-modules\DTIPrep.exe
		+	"C:\Program Files\Slicer 4.2.2-1\Slicer.exe" --launch C:\Users\<username>\AppData\Roaming\NA-MIC\Extensions-21513\DTIAtlasFiberAnalyzer\lib\Slicer-4.2\cli-modules\DTIAtlasFiberAnalyzer.exe
		+	"C:\Program Files\Slicer 4.2.2-1\Slicer.exe" --launch C:\Users\<username>\AppData\Roaming\NA-MIC\Extensions-21513\FiberViewerLight\lib\Slicer-4.2\cli-modules\FiberViewerLight.exe
		+	"C:\Program Files\Slicer 4.2.2-1\Slicer.exe" --launch C:\Users\<username>\AppData\Roaming\NA-MIC\Extensions-21513\DTIAtlasBuilder\lib\Slicer-4.2\cli-modules\DTIAtlasBuilder.exe (pipeline does not work because GreedyAtlas fails to compile)
		+	Do no forget to update <username> with the actual username.
		+
		+	It is still possible to run the tools that do not need a user interface through Slicer.
		+
		+
		+	* On Mac, the DTIAtlasBuilder pipeline fails because of GreedyAtlas, but you can still display the user interface
		+
		+
		+	* On Linux, DTIPrep is not loaded as a module in Slicer. To start it, open a terminal and run:
		+	/path/to/Slicer/Slicer --launch ~/.config/NA-MIC/Extensions-21513/DTIPrep/lib/Slicer-4.2/cli-modules/DTIPrep
		+
		+
		+	* If you downloaded the latest nightly build version, adapt the revision number in the extension path to the adequate Slicer revision number.

← Older revision		Revision as of 16:02, 31 January 2013
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	* Data uploaded on Jan 25: [[File:Spie2013SC1065UNCdata.tar.gz]]		* Data uploaded on Jan 25: [[File:Spie2013SC1065UNCdata.tar.gz]]
−	* Full DTIAtlasBuilder output data~~: (to be uploaded~~ on Midas to http://~~insight-journal~~.~~org/midas/collection~~/~~view~~/~~34)~~	+	* Full DTIAtlasBuilder output data on Midas: http://hdl.handle.net/1926/1768

← Older revision		Revision as of 16:33, 30 January 2013
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	* Data uploaded on Jan 25: [[File:Spie2013SC1065UNCdata.tar.gz]]		* Data uploaded on Jan 25: [[File:Spie2013SC1065UNCdata.tar.gz]]
−	* Full DTIAtlasBuilder output data: (to be uploaded on Midas)	+	* Full DTIAtlasBuilder output data: (to be uploaded on Midas to http://insight-journal.org/midas/collection/view/34)

@@ Line 1: / Line 1: @@
 * Copy datasets and software on memory sticks
 * Update slides
 * Data uploaded on Jan 25: [[File:Spie2013SC1065UNCdata.tar.gz]]
 * Slicer Extensions Tutorial: [[File:Spie2013SC1065UNCSlicerTutorial.pdf‎]]

← Older revision		Revision as of 22:16, 25 January 2013
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	* Data uploaded on Jan 25: [[File:Spie2013SC1065UNCdata.tar.gz]]		* Data uploaded on Jan 25: [[File:Spie2013SC1065UNCdata.tar.gz]]
		+	* Slicer Extensions Tutorial: [[File:Spie2013SC1065UNCSlicerTutorial.pdf‎]]

← Older revision		Revision as of 21:44, 25 January 2013
Line 1:		Line 1:
	* Copy datasets and software on memory sticks		* Copy datasets and software on memory sticks
	* Update slides		* Update slides
		+
		+	* Data uploaded on Jan 25: [[File:Spie2013SC1065UNCdata.tar.gz]]