Slicer:Slicer2.5 Release Notes - Revision history

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2017-07-10T18:07:09Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

Marianna: Protected "Slicer:Slicer2.5 Release Notes" [edit=sysop:move=sysop]

2008-05-21T16:26:37Z

Protected "Slicer:Slicer2.5 Release Notes" [edit=sysop:move=sysop]

Marianna: Replacing page with ''''Note:''' We are migrating this content to the slicer.org domain - The newer page is [http://www.slicer.org/slicerWiki/index.php/Slicer:Slicer2.5_Re...'

2008-05-21T16:26:28Z

Replacing page with '<big>'''Note:''' We are migrating this content to the slicer.org domain - <font color="orange">The newer page is [http://www.slicer.org/slicerWiki/index.php/Slicer:Slicer2.5_Re...'

Andy: Update from Wiki

2006-12-18T13:34:48Z

Update from Wiki

New page

== New Features in Slicer 2.5 ==

Slicer 2.5 has many new features! In addition to numerous bug fixes and other improvements, the list here highlights most major some new features in Slicer 2.5. Please also note that many of these new features are still being developed and will be improved in future releases, so you may encounter some unexpected behaviour. Please send questions about unexpected behavior to the [http://lists.bwh.harvard.edu/mailman/listinfo/slicer-users Slicer User's mailing list] and reports to the [http://www.na-mic.org/Bug bug tracker].

==== Updates to existing modules: ====

===== FMRIEngine =====

* new frontend
* support for block design
* event releated paradigm
* peristimulus histogram plotting
* multirun computation

===== vtkFreeSurferReaders =====

* MGH reader
* Automated review framework

===== Ibrowser =====

* new functionality for key frame transformation interpolation

===== DTMRI =====

* new clustering tools
* new ODF tensor glyph
* new conversion protocols
* ROI-based fiber classifying/pruning
* limited support for tensor-to-tensor registration
* Cleaned up error messages

<br />

==== Additional functionality: ====

* New module: vtkAG - nonlinear, multimodal, multichannel registration tool.
* New module: TransformVolume - arbitrary resampling of volumes with linear transform.
* New module: QueryAtlas (prototype)
* Generic readers (using ITK I/O Factories):
** Sequences of tiffs, jpgs, pngs
** Analyze VTK, GIPL and others
* Nrrd reader

<br />

==== System Improvements: ====

* Better automated building, especially on OSX
* Update to commenting script
* Better exception handling
* Cleaned up compiler warnings

== Building ==

You don't have to build Slicer yourself to use it. If you want a precompiled version, go [[Slicer:Slicer2.5_Getting_Started|here.]]

To build slicer from source, see [[Slicer:Slicer_2.5_Building|Slicer:Slicer_2.5_Building]]

* Windows
** distributed versions are built with Microsoft Visual Studio .NET in release mode (note that there may be some problems compiling with .NET 2003)

* Solaris
** We are building using gcc version 3.0.3.

* Linux
** We are building using gcc version 2.96 on RedHat 7, gcc version 3.2.2 on RedHat 9, and gcc 3.2.3 on RedHat Enterprise Linux.

* Mac OSX
** These [[Slicer:Slicer2.5_Patches_for_the_Mac|patches]] must be applied to compile on OSX.

== Installing ==

No special installation is needed -- simply unpack the distribution archive and run the platform-specific executable at the top level (for example, slicer2-win32.exe for the Windows build). The slicer distribution contains all the needed support libraries and has been tested on a variety of system configurations.

== Known Issues: Base Operations ==

* All platforms
** Model hierarchies are unreliable - use at your own risk.

* Linux
** If you are having problems running Slicer over an ssh connection with X forwarding, the problem may be that you don't have the appropriate OpenGL libraries on the machine you're sshing from.

* Mac
** Currently, there is no support for reading DICOM files with the Basic Reader. You can read in DICOMS by clicking Add Volume, then choosing DICOM from the menu, and browsing to the directory containing your DICOM files.
** Currently, there is no support for building BLT with genlib.tcl, which causes FMRIEngine's UI to fail. See the patch instructions for the Mac under the "Building" section to compile BLT and run FMRIEngine.

== Known Issues: Modules ==

As a research platform, Slicer includes several modules that are not yet fully implemented, but which the developers still felt were far enough along in functionality to provide utility for the community. As such, you may find that some operations do not behave as expected, particularly where they interact with other slicer functions. Please let us know about these issues by filing appropriate bug reports.

* Mac
** There is no currently no print header functionality for OSX.
** See the note under "Base Operations" regarding FMRIEngine functionality.

== Reporting Bugs ==

Please go to http://www.na-mic.org/Bug/ and report bugs for Slicer version 2.5.x.

== Where to go for Help ==

Compilation/development questions can be sent to the [http://lists.bwh.harvard.edu/mailman/listinfo/slicer-devel Slicer Developer's Mailing List]. Questions about running Slicer can be sent to the [http://lists.bwh.harvard.edu/mailman/listinfo/slicer-users Slicer User's Mailing List].

← Older revision		Revision as of 18:07, 10 July 2017
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−	<big>'''Note:''' We are migrating this content to the slicer.org domain - <font color="orange">The newer page is [~~http~~://www.slicer.org/~~slicerWiki/index.php~~/Slicer:Slicer2.5_Release_Notes here]</font></big>	+	<big>'''Note:''' We are migrating this content to the slicer.org domain - <font color="orange">The newer page is [https://www.slicer.org/wiki/Slicer:Slicer2.5_Release_Notes here]</font></big>

← Older revision		Revision as of 16:26, 21 May 2008
Line 1:		Line 1:
−	~~== New Features in Slicer 2.5 ==~~	+	<big>'''Note:''' We are migrating this content to the slicer.org domain - <font color="orange">The newer page is [http://www.slicer.org/slicerWiki/index.php/Slicer:Slicer2.5_Release_Notes here]</font></big>
−
−	Slicer 2.5 has many new features! In addition to numerous bug fixes and other improvements, the list here highlights most major some new features in Slicer 2.5. Please also note that many of these new features are still being developed and will be improved in future releases, so you may encounter some unexpected behaviour. Please send questions about unexpected behavior to the [http://lists.bwh.harvard.edu/mailman/listinfo/slicer-users Slicer User's mailing list] and reports to the [http://www.na-mic.org/Bug bug tracker].
−
−	~~==== Updates to existing modules: ====~~
−
−	~~===== FMRIEngine =====~~
−
−	* new frontend
−	* support for block design
−	* event releated paradigm
−	* peristimulus histogram plotting
−	* multirun computation
−
−	~~===== vtkFreeSurferReaders =====~~
−
−	* MGH reader
−	* Automated review framework
−
−	~~===== Ibrowser =====~~
−
−	* new functionality for key frame transformation interpolation
−
−	~~===== DTMRI =====~~
−
−	* new clustering tools
−	* new ODF tensor glyph
−	* new conversion protocols
−	* ROI-based fiber classifying/pruning
−	* limited support for tensor-to-tensor registration
−	* Cleaned up error messages
−
−	<~~br /~~>
−
−	~~==== Additional functionality~~: ~~====~~
−
−	* New module: vtkAG - nonlinear, multimodal, multichannel registration tool.
−	* New module: TransformVolume - arbitrary resampling of volumes with linear transform.
−	* New module: QueryAtlas (prototype)
−	* Generic readers (using ITK I/O Factories):
−	** Sequences of tiffs, jpgs, pngs
−	** Analyze VTK, GIPL and others
−	* Nrrd reader
−
−	~~<br />~~
−
−	~~==== System Improvements: ====~~
−
−	* Better automated building, especially on OSX
−	* Update to commenting script
−	* Better exception handling
−	* Cleaned up compiler warnings
−
−	~~== Building ==~~
−
−	~~You don~~'~~t have to build Slicer yourself to use it. If you want a precompiled version, go [[Slicer:Slicer2.5_Getting_Started\|here.]]~~
−
−	~~To build slicer from source, see [[Slicer:Slicer_2.5_Building\|Slicer:Slicer_2.5_Building]]~~
−
−	* Windows
−	** distributed versions are built with Microsoft Visual Studio .NET in release mode (note that there may be some problems compiling with .NET 2003)
−
−	* Solaris
−	** We are building using gcc version 3.0.3.
−
−	* Linux
−	** We are ~~building using gcc version 2.96 on RedHat 7, gcc version 3.2.2 on RedHat 9, and gcc 3.2.3 on RedHat Enterprise Linux.~~
−
−	* Mac OSX
−	** These [[Slicer:Slicer2.5_Patches_for_the_Mac\|patches]] must be applied to ~~compile on OSX.~~
−
−	~~== Installing ==~~
−
−	~~No special installation is needed -- simply unpack the distribution archive and run the platform-specific executable at~~ the ~~top level (for example, slicer2-win32.exe for the Windows build). The~~ slicer ~~distribution contains all the needed support libraries and has been tested on a variety of system configurations~~.
−
−	== ~~Known Issues: Base Operations ==~~
−
−	* All platforms
−	** Model hierarchies are unreliable - use at your own risk.
−
−	* Linux
−	** If you are having problems running Slicer over an ssh connection with X forwarding, the problem may be that you don't have the appropriate OpenGL libraries on the machine you're sshing from.
−
−	* Mac
−	** Currently, there is no support for reading DICOM files with the Basic Reader. You can read in DICOMS by clicking Add Volume, then choosing DICOM from the menu, and browsing to the directory containing your DICOM files.
−	** Currently, there is no support for building BLT with genlib.tcl, which causes FMRIEngine's UI to fail. See the patch instructions for the Mac under the "~~Building~~" ~~section to compile BLT and run FMRIEngine.~~
−
−	~~== Known Issues: Modules ==~~
−
−	As a research platform, Slicer includes several modules that are not yet fully implemented, but which the developers still felt were far enough along in functionality to provide utility for the community. As such, you may find that some operations do not behave as expected, particularly where they interact with other slicer functions. Please let us know about these issues by filing appropriate bug reports.
−
−	* Mac
−	** There is ~~no currently no print header functionality for OSX.~~
−	** See the note under "Base Operations" regarding FMRIEngine functionality.
−
−	~~== Reporting Bugs ==~~
−
−	~~Please go to~~ http://www.~~na-mic~~.org/~~Bug~~/ ~~and report bugs for Slicer version 2~~.~~5.x.~~
−
−	~~== Where to go for Help ==~~
−
−	~~Compilation~~/~~development questions can be sent to the [http~~:~~//lists~~.~~bwh.harvard.edu/mailman/listinfo/slicer-devel Slicer Developer's Mailing List~~]~~. Questions about running Slicer can be sent to the [http:~~//~~lists.bwh.harvard.edu/mailman/listinfo/slicer-users Slicer User's Mailing List].~~

← Older revision	Revision as of 16:26, 21 May 2008
(No difference)