Slicer3:ColorsFiducialsFreesurferModelmaker - Revision history

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2017-07-10T18:07:27Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

Marianna: Protected "Slicer3:ColorsFiducialsFreesurferModelmaker" [edit=sysop:move=sysop]

2008-05-22T16:09:04Z

Protected "Slicer3:ColorsFiducialsFreesurferModelmaker" [edit=sysop:move=sysop]

Marianna: Unprotected "Slicer3:ColorsFiducialsFreesurferModelmaker"

2008-05-19T17:37:42Z

Unprotected "Slicer3:ColorsFiducialsFreesurferModelmaker"

Marianna: Unprotected "Slicer3:ColorsFiducialsFreesurferModelmaker"

2008-05-19T17:37:26Z

Unprotected "Slicer3:ColorsFiducialsFreesurferModelmaker"

Marianna: Replacing page with ''''Note:''' We are migrating this content to the slicer.org domain - The newer page is [http://www.slicer.org/slicerWiki/index.php/Slicer3:ColorsFiduc...'

2008-05-19T17:37:15Z

Replacing page with '<big>'''Note:''' We are migrating this content to the slicer.org domain - <font color="orange">The newer page is [http://www.slicer.org/slicerWiki/index.php/Slicer3:ColorsFiduc...'

Naucoin: Apr 2007 update

2007-04-18T22:24:37Z

Apr 2007 update

Naucoin: Apr 07 update

2007-04-18T22:23:13Z

Apr 07 update

Naucoin: Apr 2007 update

2007-04-18T22:19:23Z

Apr 2007 update

Naucoin: Apr 2007 update

2007-04-18T22:18:07Z

Apr 2007 update

Naucoin: added 4 blocks here since spam filter blocked edit on AHM project week page

2007-01-10T05:45:44Z

added 4 blocks here since spam filter blocked edit on AHM project week page

← Older revision		Revision as of 18:07, 10 July 2017
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−	<big>'''Note:''' We are migrating this content to the slicer.org domain - <font color="orange">The newer page is [~~http~~://www.slicer.org/~~slicerWiki/index.php~~/Slicer3:ColorsFiducialsFreesurferModelmaker here]</font></big>	+	<big>'''Note:''' We are migrating this content to the slicer.org domain - <font color="orange">The newer page is [https://www.slicer.org/wiki/Slicer3:ColorsFiducialsFreesurferModelmaker here]</font></big>

← Older revision		Revision as of 17:37, 19 May 2008
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−	~~== 2007 AHM Project Half Week ==~~	+	<big>'''Note:''' We are migrating this content to the slicer.org domain - <font color="orange">The newer page is [http://www.slicer.org/slicerWiki/index.php/Slicer3:ColorsFiducialsFreesurferModelmaker here]</font></big>
−
−	* [[Media:2007_Project_Half_Week_Slicer3Colors.ppt \| 4 block:Colors]]
−	* [[Media:2007_Project_Half_Week_Slicer3Fiducials.ppt \| 4 block:Fiducials]]
−	* [[Media:2007_Project_Half_Week_Slicer3FreeSurfer.ppt \| 4 block:FreeSurfer]]
−	* [[Media:2007_Project_Half_Week_Slicer3ModelMaker.ppt \| 4 block:ModelMaker]]
−
−	~~== Colors ==~~
−
−	* MRML Color nodes implemented
−	* basic module UI done, display colours with scalar id, names, color box
−	* incorporated color node selector in volumes and models GUIs
−	* FreeSurfer default Heat, Green/Red look up tables are supported, as well as reading in default labels and annotation labels, and loading color tables from annotation files.
−	* Procedural color nodes expanded, support for vtkColorTransferFunction as well as vtkLookupTable in the viewer widget.
−	* Scalar overlays supported in the Models GUI, Display tab.
−	* '''~~TO DO~~'''~~: continue work on UI~~
−
−	~~== Fiducials ==~~
−
−	* MRML Node for list implemented, GUI for module refined
−	* vtkGlyphSource2D subclassed for Slicer, StarBurst option integrated
−	* vtkSlicerGlyphSource2D usable in both the ~~main viewer and in 2D slices~~
−	* 3D glyphs of various types implemented for the 3D viewer
−	* S. ~~Pieper linked 2D and 3D fiducials, can drag fiducials in 2D~~
−	* Placing fiducials in the 3D window mostly complete
−	* '''TO DO''': ~~Support dragging fiducials in the 3D window~~
−
−	~~== FreeSurfer ==~~
−
−	* MGH ITK Reader ported from NAMIC Sandbox, works as any other volume reader now
−	* Slicer 2.~~x source code ported as a Slicer 3 Library, used in Query Atlas scripts~~
−	* FreeSurfer .~~W surfaces and CURV surfaces are loadable through the Models GUI~~
−	* FreeSurfer scalar overlays are loadable via the Models Display GUI: ~~thickness, curv, sulc, area, annot, and the new volume encoded scalars in MGH format~~
−	* vtkFSLookupTables integrated into MRML Color Nodes
−	* Added support to composite two scalar arrays into one
−	* color transfer functions support added to MRML Color Nodes for calculating transfer functions when composite two scalar arrays
−	* '''TODO''': other volume format support through the GUI instead of just scriptable, support scalar overlay compositing through the GUI
−
−	~~== ModelMaker ==~~
−
−	* Implemented as a Command Line Module
−	* Added option to write out a MRML file with display nodes giving color information (tries to pick a good default color node to get names from)
−	* '''TODO''': waiting for support for XML files as input to the CLI modules so can use a defined vtkMRMLColorNode to name models

← Older revision		Revision as of 22:24, 18 April 2007
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	* Implemented as a Command Line Module		* Implemented as a Command Line Module
−	* '''TODO''': ~~link in~~ the vtkMRMLColorNode ~~classes~~ to name models	+	* Added option to write out a MRML file with display nodes giving color information (tries to pick a good default color node to get names from)
		+	* '''TODO''': waiting for support for XML files as input to the CLI modules so can use a defined vtkMRMLColorNode to name models

@@ Line 31: / Line 31: @@
 * Slicer 2.x source code ported as a Slicer 3 Library, used in Query Atlas scripts
 * FreeSurfer .W surfaces and CURV surfaces are loadable through the Models GUI
-* FreeSurfer scalar overlays are loadable via the Models Display GUI
+* FreeSurfer scalar overlays are loadable via the Models Display GUI: thickness, curv, sulc, area, annot, and the new volume encoded scalars in MGH format
-* '''TODO''': other volume format support through the GUI instead of just scriptable, integrate FSLookupTable with the MRML Color Nodes
+* vtkFSLookupTables integrated into MRML Color Nodes
 == ModelMaker ==

@@ Line 21: / Line 21: @@
 * vtkGlyphSource2D subclassed for Slicer, StarBurst option integrated
 * vtkSlicerGlyphSource2D usable in both the main viewer and in 2D slices
-* S. Pieper linked 2D and 3D fiducials
+* 3D glyphs of various types implemented for the 3D viewer
-* '''TO DO''': debug 3D glyphs for the 3D window, add picking in the 3D window
+* S. Pieper linked 2D and 3D fiducials, can drag fiducials in 2D
 == FreeSurfer ==

← Older revision	Revision as of 16:09, 22 May 2008
(No difference)

@@ Line 11: / Line 11: @@
 * basic module UI done, display colours with scalar id, names, color box
 * incorporated color node selector in volumes and models GUIs
-* '''TO DO''': continue work on UI, support FreeSurfer Color Lookup Tables, support scalar overlays, handle default color node references for volumes more elegantly
+* FreeSurfer default Heat, Green/Red look up tables are supported, as well as reading in default labels and annotation labels, and loading color tables from annotation files.
 == Fiducials ==

← Older revision		Revision as of 05:45, 10 January 2007
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		+	== 2007 AHM Project Half Week ==
		+
		+	* [[Media:2007_Project_Half_Week_Slicer3Colors.ppt \| 4 block:Colors]]
		+	* [[Media:2007_Project_Half_Week_Slicer3Fiducials.ppt \| 4 block:Fiducials]]
		+	* [[Media:2007_Project_Half_Week_Slicer3FreeSurfer.ppt \| 4 block:FreeSurfer]]
		+	* [[Media:2007_Project_Half_Week_Slicer3ModelMaker.ppt \| 4 block:ModelMaker]]
		+
	== Colors ==		== Colors ==