Slicer3:DTMRI - Revision history

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2017-07-10T18:07:32Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

Marianna: Protected "Slicer3:DTMRI" [edit=sysop:move=sysop]

2008-05-22T16:25:43Z

Protected "Slicer3:DTMRI" [edit=sysop:move=sysop]

Marianna: Unprotected "Slicer3:DTMRI"

2008-05-19T18:12:11Z

Unprotected "Slicer3:DTMRI"

Marianna: Replacing page with ''''Note:''' We are migrating this content to the slicer.org domain - The newer page is [http://www.slicer.org/slicerWiki/index.php/Slicer3:DTMRI here...'

2008-05-19T18:11:59Z

Replacing page with '<big>'''Note:''' We are migrating this content to the slicer.org domain - <font color="orange">The newer page is [http://www.slicer.org/slicerWiki/index.php/Slicer3:DTMRI here...'

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Alexy at 19:31, 1 April 2008

2008-04-01T19:31:11Z

Alexy: /* Data Representation */

2008-01-09T18:35:40Z

Data Representation

Alexy: /* Data Storage and I/O */

2008-01-09T17:35:46Z

Data Storage and I/O

Alexy at 17:21, 9 January 2008

2008-01-09T17:21:19Z

Alexy: /* Tensor Estimation from DWI */

2008-01-09T17:18:10Z

Tensor Estimation from DWI

Alexy at 17:08, 9 January 2008

2008-01-09T17:08:21Z

← Older revision		Revision as of 18:07, 10 July 2017
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−	<big>'''Note:''' We are migrating this content to the slicer.org domain - <font color="orange">The newer page is [~~http~~://www.slicer.org/~~slicerWiki/index.php~~/Slicer3:DTMRI here]</font></big>	+	<big>'''Note:''' We are migrating this content to the slicer.org domain - <font color="orange">The newer page is [https://www.slicer.org/wiki/Slicer3:DTMRI here]</font></big>

← Older revision		Revision as of 19:31, 1 April 2008
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		+	<flash>file=dti_glyphs.swf\|width=800\|height=600\|quality=best\|loop=true\|play=true</flash>
		+
	= Goals =		= Goals =

@@ Line 13: / Line 13: @@
 == Data Representation ==
 MRML nodes for different data representations involved in DTI analysis:
-* Diffusion Weighted Images: [http://www.na-mic.org/ViewVC/index.cgi/trunk/Libs/MRML/vtkMRMLDiffusionWeightedVolumeNode.h?view=log vtkMRMLDiffusionWeightedVolumeNode].
+* Diffusion Weighted Images, represented as vtkImageData: [http://www.na-mic.org/ViewVC/index.cgi/trunk/Libs/MRML/vtkMRMLDiffusionWeightedVolumeNode.h?view=log vtkMRMLDiffusionWeightedVolumeNode].
-* Diffusion Tensor Images:  [http://www.na-mic.org/ViewVC/index.cgi/trunk/Libs/MRML/vtkMRMLDiffusionTensorVolumeNode.h?view=log vtkMRMLDiffusionTensorVolumeNode].
+* Diffusion Tensor Images, represented as vtkImageData:  [http://www.na-mic.org/ViewVC/index.cgi/trunk/Libs/MRML/vtkMRMLDiffusionTensorVolumeNode.h?view=log vtkMRMLDiffusionTensorVolumeNode].
-* Fiber Bundles: [http://www.na-mic.org/ViewVC/index.cgi/trunk/Libs/MRML/vtkMRMLFiberBundleNode.h?view=log vtkMRMLFiberBundleNode].
+* Fiber Bundles, represented as vtkPolyData: [http://www.na-mic.org/ViewVC/index.cgi/trunk/Libs/MRML/vtkMRMLFiberBundleNode.h?view=log vtkMRMLFiberBundleNode].
 ==Data Storage and I/O ==

@@ Line 18: / Line 18: @@
 ==Data Storage and I/O ==
-* DWI and DTI I/O: NRRD is the format supported by Slicer 3 for storing DWI and DTI images.
+* DWI and DTI I/O: NRRD is the format supported by Slicer3 for storing DWI and DTI images.
 ** NNRD reader/writer: [http://www.na-mic.org/ViewVC/index.cgi/trunk/Libs/vtkTeem/vtkNRRDReader.h?view=log vtkNRRDReader] and [http://www.na-mic.org/ViewVC/index.cgi/trunk/Libs/vtkTeem/vtkNRRDWriter.h?view=log vtkNRRDWriter].
 ** MRML Storage node: [http://www.na-mic.org/ViewVC/index.cgi/trunk/Libs/MRML/vtkMRMLNRRDStorageNode.h?view=log vtkMRMLNRRDStorageNode].
 * Fiber I/O: vtkPolyData has been the format adopted for the description of fibers
 ** MRML Storage node: [http://www.na-mic.org/ViewVC/index.cgi/trunk/Libs/MRML/vtkMRMLFiberBundleStorageNode.h?view=log vtkMRMLFiberBundleStorageNode]
 == Visualization/Display  ==

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 * Volume Display GUI provides different display controls based on the type of the volume
 == Tractography Module ==
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 <br>
-* Slicer Models module also can be used to load, save, display tracts as lines, but it does not provide tensor data display.
+* Slicer Models module also can be used to load, save, display tracts as lines, but it does not provide tensor data display
 == Tensor Estimation from DWI Module ==
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 Teem currently provides a clean interface to do this estimation in a voxel by voxel fashion. Collaboration with Gordon Kindlmann for a vtk filter implementation that encapsulates the estimation process ([http://www.na-mic.org/ViewVC/index.cgi/trunk/Libs/vtkTeem/vtkTeemEstimateDiffusionTensor.h?view=log vtkTeemEstimateDiffusionTensor]).
-==  Diffusion Tensor Scalar Measurements  ==
+==  Diffusion Tensor Scalar Measurements Module ==
 * CLI Module: [http://www.na-mic.org/ViewVC/index.cgi/trunk/Applications/CLI/DiffusionTensorMathematics.xml?view=log DiffusionTensorMathematics].
 * Implemented in vtkTeem library [http://www.na-mic.org/ViewVC/index.cgi/trunk/Libs/vtkTeem/vtkDiffusionTensorMathematics.h?view=log vtkDiffusionTensorMathematics].
-== Rician LMMSE Filter ==
+== Rician LMMSE Filter Module ==
 * CLI Module: [http://www.na-mic.org/ViewVC/index.cgi/trunk/Applications/CLI/DiffusionApplications/dwiNoiseFilter/dwiNoiseFilter.xml?view=log dwiNoiseFilter].
@@ Line 93: / Line 96: @@
 *Additional [[Slicer3:Module:Rician_Noise_Removal | Rician filtering module]] provided by Sylvain Gouttard et al
 ==  Tractography ROI Seeding Module  ==

← Older revision	Revision as of 16:25, 22 May 2008
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← Older revision	Revision as of 18:12, 19 May 2008
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 * Visualization pipelines for DTI, DWI volumes, and fiber bundles are incorporated into the corresponding display nodes.
 * DWI volumes are displayed as separate components.
 * DTI volumes are displayed as computed scalar properties (such as FA, Linear Measure, Color Orientation, etc.)
 * Fiber bundles are displayed as lines, tubes, and glyphs with their own properties and colors
 == Diffusion Processing Toolbox ==
@@ Line 67: / Line 49: @@
 == Volumes Module ==
 * Volume module is capable of loading and saving DWI and DTI images in the NRRD file format
 * Volume Module is capable of displaying DWI image components and DTI images as derived scalar properties
 * Volume Display GUI provides different display controls based on the type of the volume
 == Tractography Module ==
 * Tractography Display-Load-Save module is capable of loading and saving fiber tracts in the vtkPolyData file formats.
 * Tractography Display-Load-Save module is capable of displaying fiber tracts as lines, tubes, and glyphs, all colored by different scalar properties
-* Modlels module also can be used to load, save, display tracts as lines, but it does not provide tensor data display.
 == Tensor Estimation from DWI ==