Slicer3:Execution Model Documentation:Python - Revision history

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2017-07-10T17:28:26Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

Marianna: Protected "Slicer3:Execution Model Documentation:Python" [edit=sysop:move=sysop]

2008-05-22T16:09:53Z

Protected "Slicer3:Execution Model Documentation:Python" [edit=sysop:move=sysop]

Marianna: Unprotected "Slicer3:Execution Model Documentation:Python"

2008-05-19T19:48:31Z

Unprotected "Slicer3:Execution Model Documentation:Python"

Marianna: Replacing page with ''''Note:''' We are migrating this content to the slicer.org domain - The newer page is [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_M...'

2008-05-19T19:48:11Z

Replacing page with '<big>'''Note:''' We are migrating this content to the slicer.org domain - <font color="orange">The newer page is [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_M...'

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Lantiga: /* Python Module collection */

2008-01-06T23:38:34Z

Python Module collection

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Lantiga: /* Python Module collection */

2007-12-13T11:24:05Z

Python Module collection

Lantiga at 11:21, 13 December 2007

2007-12-13T11:21:59Z

Lantiga: /* SurfaceConnectivity.py */

2007-12-13T11:20:51Z

SurfaceConnectivity.py

Lantiga: /* SurfaceTransformHardening.py */

2007-11-09T12:05:28Z

SurfaceTransformHardening.py

Lantiga: /* VolumeTransformHardening.py */

2007-11-09T12:05:12Z

VolumeTransformHardening.py

← Older revision		Revision as of 17:28, 10 July 2017
Line 1:		Line 1:
−	<big>'''Note:''' We are migrating this content to the slicer.org domain - <font color="orange">The newer page is [~~http~~://www.slicer.org/~~slicerWiki/index.php~~/Slicer3:Execution_Model_Documentation:Python here]</font></big>a	+	<big>'''Note:''' We are migrating this content to the slicer.org domain - <font color="orange">The newer page is [https://www.slicer.org/wiki/Slicer3:Execution_Model_Documentation:Python here]</font></big>a

@@ Line 44: / Line 44: @@
 * [[Slicer3:Execution Model Documentation:Python#SurfaceToolbox.py | SurfaceToolbox.py]]
-You can download the zipfile with all these files and (some work in progress) here: [[Image:Python.zip]]. Either place all the files in the Slicer3/Modules/Python directory (replacing the existing files) or just throw the .py files you're interested in into Slicer3-build/lib/Slicer3/Plugins directory and launch Slicer3.
+You can download the zipfile with all these files and (some work in progress) here: [[Image:PythonModules.zip]]. Either place all the files in the Slicer3/Modules/Python directory (replacing the existing files) or just throw the .py files you're interested in into Slicer3-build/lib/Slicer3/Plugins directory and launch Slicer3.
 ===PythonScript.py===

@@ Line 43: / Line 43: @@
 * [[Slicer3:Execution Model Documentation:Python#SurfaceICPRegistration.py | SurfaceICPRegistration.py]]
 * [[Slicer3:Execution Model Documentation:Python#SurfaceToolbox.py | SurfaceToolbox.py]]
 You can download the zipfile with all these files and (some work in progress) here: [[Image:Python.zip]]. Either place all the files in the Slicer3/Modules/Python directory (replacing the existing files) or just throw the .py files you're interested in into Slicer3-build/lib/Slicer3/Plugins directory and launch Slicer3.
@@ Line 706: / Line 704: @@
       outputSurface.SetAndObservePolyData(surface)
       return

@@ Line 172: / Line 172: @@
 ===SurfaceConnectivity.py===
-This module runs a connectivity filter on an input surface. There are two modes of operation: one is to extract all regions and color them accordingly, the other is to extract the region closest to a fiducial. Optionally, the module will generate a list of fiducials named "Region #" placed on a point of each connected region. It's a nice example on how one can interact with the MRML scene.
+This module runs a connectivity filter on an input surface. There are two modes of operation: one is to extract all regions and color them accordingly, the other is to extract the region closest to a fiducial. Optionally, the module will generate a list of fiducials named "Region #" placed on a point of each connected region. It's a nice example on how one can interact with the MRML scene. FIXME: since Python modules are run in the processing thread, AddNode currently causes a crash (possible solution - provide a thread-safe version of it).
   XML = """<?xml version="1.0" encoding="utf-8"?>
@@ Line 262: / Line 262: @@
       if enableOutputFiducials:
           fiducialList = scene.CreateNodeByClass("vtkMRMLFiducialListNode")
-          scene.AddNode(fiducialList)
+          fiducialList.DisableModifiedEventOn()
           thresholdPoints = slicer.vtkThresholdPoints.New()
           thresholdPoints.SetInput(connectivityFilter.GetOutput())
@@ Line 276: / Line 277: @@
                   fiducialList.SetNthFiducialXYZ(fid,point[0],point[1],point[2])
                   fiducialList.SetNthFiducialLabelText(fid,"Region %d" % i)
       outputSurface.SetAndObservePolyData(connectivityFilter.GetOutput())
       return

@@ Line 709: / Line 709: @@
 ===SurfaceTransformHardening.py===
-This module takes a surface belonging to a node in the MRML tree and hardens the transforms up to the root node on it, i.e. surface point coordinates are transformed to world coordinates. This is useful for moving a surface node to the root while retaining its position in world space.
+This module takes a surface in the MRML tree and hardens the transforms up to the root node on it, i.e. surface point coordinates are transformed to world coordinates. This is useful for moving a surface node to the root while retaining its position in world space.
   XML = """<?xml version="1.0" encoding="utf-8"?>

← Older revision	Revision as of 16:09, 22 May 2008
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← Older revision	Revision as of 19:48, 19 May 2008
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← Older revision		Revision as of 12:05, 9 November 2007
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	===VolumeTransformHardening.py===		===VolumeTransformHardening.py===

		+	This module is the analogous to SurfaceTransformHardening for volumes. It takes a volume node in the MRML tree and hardens the transforms up to the root node on it, so that the IJKToRASMatrix brings ijk coordinates directly to world coordinates. This is useful for moving a volume node to the root while retaining its position in world space.

	XML = """<?xml version="1.0" encoding="utf-8"?>		XML = """<?xml version="1.0" encoding="utf-8"?>