Slicer3:openIGT Tutorial For 4D Volume Rendering Data - Revision history

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2017-07-10T18:02:51Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

Marianna: Protected "Slicer3:openIGT Tutorial For 4D Volume Rendering Data" [edit=sysop:move=sysop]

2008-05-20T20:21:38Z

Protected "Slicer3:openIGT Tutorial For 4D Volume Rendering Data" [edit=sysop:move=sysop]

Marianna: Replacing page with ''''Note:''' We are migrating this content to the slicer.org domain - The newer page is [http://www.slicer.org/slicerWiki/index.php/Slicer3:openIGT_Tut...'

2008-05-20T20:21:28Z

Replacing page with '<big>'''Note:''' We are migrating this content to the slicer.org domain - <font color="orange">The newer page is [http://www.slicer.org/slicerWiki/index.php/Slicer3:openIGT_Tut...'

Bensch: /* Check Connection */

2008-03-26T20:41:15Z

Check Connection

Bensch at 20:32, 26 March 2008

2008-03-26T20:32:34Z

Bensch: /* Setting up the 3D Slicer */

2008-03-26T20:26:24Z

Setting up the 3D Slicer

Bensch: /* Prepare Slicer3 */

2008-03-26T20:26:00Z

Prepare Slicer3

Bensch: /* Check Connection */

2008-03-26T20:24:27Z

Check Connection

Bensch: /* Check Connection */

2008-03-26T20:16:40Z

Check Connection

Bensch: /* Check Connection */

2008-03-26T20:15:33Z

Check Connection

← Older revision		Revision as of 18:02, 10 July 2017
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−	<big>'''Note:''' We are migrating this content to the slicer.org domain - <font color="orange">The newer page is [~~http~~://www.slicer.org/~~slicerWiki/index.php~~/Slicer3:openIGT_Tutorial_For_4D_Volume_Rendering_Data here]</font></big>	+	<big>'''Note:''' We are migrating this content to the slicer.org domain - <font color="orange">The newer page is [https://www.slicer.org/wiki/Slicer3:openIGT_Tutorial_For_4D_Volume_Rendering_Data here]</font></big>

← Older revision		Revision as of 20:21, 20 May 2008
Line 1:		Line 1:
−	~~This tutorial will teach you how to setup Slicer3 and an image provider to send and display 4D image data. The theory is described on [[Slicer3:4DUltrasound 4D US]]~~	+	<big>'''Note:''' We are migrating this content to the slicer.org domain - <font color="orange">The newer page is [http://www.slicer.org/slicerWiki/index.php/Slicer3:openIGT_Tutorial_For_4D_Volume_Rendering_Data here]</font></big>
−
−	~~= Prepare Slicer3 =~~
−
−	~~== Downloading and Compiling the source ==~~
−	*'''Download and compile''' ~~a copy of Slicer3 as described in [[Slicer3~~:~~Build_Instructions]].~~
−	** !! use http://www.na-mic.org/svn/Slicer3/branches/igt_cuda_merge as the source !!
−
−	~~== Setting up the 3D Slicer ==~~
−	~~#Start up Slicer3~~
−	~~#Select the ''~~'~~OpenIGTLink Module~~''~~' from the Modules Tab. [[Image:Slicer3_Select_OpenIGTLinkModule.png\|thumb\|none\|Select the OpenIGTLink Module]]~~
−	~~#Start the server, by clicking on the '''Connector Browser''' Tab. [[Image:Slicer3_Enable_OpenIGT_Server.png\|thumb\|none\|Enable OpenIGT Server]]~~
−	~~##Add a Server~~
−	~~##Select a Name (optional)~~
−	~~##Set the type~~ to ~~server~~
−	~~##Enable~~ the ~~server by setting the status to 'Enabled'~~.
−
−	~~== Get IP~~-~~Address of the Slicer Computer~~ ==
−	~~Store the IP-Address of the computer. This~~ is ~~done by 'ipconfig' on Windows and 'ifconfig' on UNIX.~~
−
−	~~= Prepare the Image Provider =~~
−	~~== Downloading and Compilation ==~~
−	*Check out the Server code from http://www.~~na-mic~~.org/~~svn~~/~~NAMICSandBox/trunk/BRPTools/ScannerIO~~
−	~~svn co http://www~~.~~na-mic.org~~/~~svn/NAMICSandBox/trunk/BRPTools/ScannerIO~~
−	*Compile the Code
−	~~cmake .~~
−	~~make~~
−	*Download the data package with ct-scans of a human heart [[Media:~~heart256.zip~~]~~] and unzip it into the source directory~~
−	~~== Start the Scanner-Simulator ==~~
−	*start the scanner with the Arguments:
−	~~Usage: ./bin~~/~~ScannerSim <x~~> <~~y> <z> <type> <rx> <ry> <rz> <fname_temp> <bindex> <eindex> <fps~~> ~~<hostname>~~
−	~~<x>, <y>, <z> : Number of pixels in x, y and z direction.~~
−	~~<type> : Type (2:int8 3:uint8 4:int16 5:uint16 6:int32 7:uint32~~
−	~~<rx>, <ry>, <rz>: resolution (pixel size) in x, y and z direction~~
−	~~<fname_temp> : File name template (e.g. "RawImage_%04d.raw").~~
−	~~<bindex> : Begin index.~~
−	~~<eindex> : End index.~~
−	~~<fps> : Frame rate (frames per second).~~
−	~~<hostname> : hostname (port# is fixed to 18944)~~
−	*For the heart dataset the following will do:
−	~~./bin/ScannerSim 256 256 256 3 1 1 1 heart256-%d.raw 1 5 10 [Slicer-IP-Address]~~
−
−	~~= Check Connection =~~
−	~~#The Provider should now transfer images to Slicer3 (should be running)~~
−	~~#In Slicer3 go to the '''Data''' Module~~
−	~~#In the '''Display & Modify Scene''' section should now be a new node called ''Scanner(vtkMRMLScalarVolumeNode1)''. [[Image:Slicer3_OpenIGT_Data_Shows_Scanner_Node.png\|thumb\|none\|Scanner Visible]]~~
−	~~#Select the module '''VolumeRendering'''.~~
−	~~#You can now choose ''Scanner'' as '''Source Volume''' [[Image:Slicer3_OpenIGT_VolumeRendering_SelectScanner.png\|thumb\|none\|Select Scanner in Volume Rendering Module]]~~

@@ Line 43: / Line 43: @@
 = Check Connection =
 #The Provider should now transfer images to Slicer3 (should be running)
-#In Slicer3 go to the Data Module
+#In Slicer3 go to the '''Data''' Module
 #In the '''Display & Modify Scene''' section should now be a new node called ''Scanner(vtkMRMLScalarVolumeNode1)''. [[Image:Slicer3_OpenIGT_Data_Shows_Scanner_Node.png|thumb|none|Scanner Visible]]
 #Select the module '''VolumeRendering'''.
 #You can now choose ''Scanner'' as '''Source Volume''' [[Image:Slicer3_OpenIGT_VolumeRendering_SelectScanner.png|thumb|none|Select Scanner in Volume Rendering Module]]

← Older revision		Revision as of 20:32, 26 March 2008
Line 1:		Line 1:
−	This tutorial will teach you how to setup Slicer3 and an image provider to send and display 4D image data.	+	This tutorial will teach you how to setup Slicer3 and an image provider to send and display 4D image data. The theory is described on [[Slicer3:4DUltrasound 4D US]]

	= Prepare Slicer3 =		= Prepare Slicer3 =

@@ Line 10: / Line 10: @@
 #Start up Slicer3
 #Select the '''OpenIGTLink Module''' from the Modules Tab. [[Image:Slicer3_Select_OpenIGTLinkModule.png|thumb|none|Select the OpenIGTLink Module]]
-#Start the server, by clicking on the 'Connector Browser' Tab. [[Image:Slicer3_Enable_OpenIGT_Server.png|thumb|none|Enable OpenIGT Server]]
+#Start the server, by clicking on the '''Connector Browser''' Tab. [[Image:Slicer3_Enable_OpenIGT_Server.png|thumb|none|Enable OpenIGT Server]]
 ##Add a Server
 ##Select a Name (optional)

← Older revision	Revision as of 20:21, 20 May 2008
(No difference)

@@ Line 4: / Line 4: @@
 == Downloading and Compiling the source ==
-*Download and Compile a copy of Slicer as described in [[Slicer3:Build_Instructions]].
+*'''Download and compile''' a copy of Slicer3 as described in [[Slicer3:Build_Instructions]].
 ** !! use http://www.na-mic.org/svn/Slicer3/branches/igt_cuda_merge as the source !!
 == Setting up the 3D Slicer ==
 #Start up Slicer3
-#Select the OpenIGTLink Module from the Modules Tab [[Image:Slicer3_Select_OpenIGTLinkModule.png|thumb|none|Select the OpenIGTLink Module]]
+#Select the '''OpenIGTLink Module''' from the Modules Tab. [[Image:Slicer3_Select_OpenIGTLinkModule.png|thumb|none|Select the OpenIGTLink Module]]
 #Start the server, by clicking on the 'Connector Browser' Tab. [[Image:Slicer3_Enable_OpenIGT_Server.png|thumb|none|Enable OpenIGT Server]]
 ##Add a Server

@@ Line 44: / Line 44: @@
 #The Provider should now transfer images to Slicer3 (should be running)
 #In Slicer3 go to the Data Module
-#In the '''Display & Modify Scene''' section should now be a new node called ''Scanner(vtkMRMLScalarVolumeNode1)''. [[Image:Slicer3:OpenIGT_Data_Shows_Scanner_Node.png|thumb|none|Scanner Visible]]
+#In the '''Display & Modify Scene''' section should now be a new node called ''Scanner(vtkMRMLScalarVolumeNode1)''. [[Image:Slicer3_OpenIGT_Data_Shows_Scanner_Node.png|thumb|none|Scanner Visible]]
 #Select the module '''Volume Rendering'''.
 #You can now choose ''Scanner'' as '''Source Volume'''.