SlicerCMFWorkshop Italy2015 - Revision history

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2017-07-10T18:07:24Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

Jb.vimort at 19:14, 1 December 2015

2015-12-01T19:14:17Z

Jb.vimort at 20:15, 25 November 2015

2015-11-25T20:15:24Z

Jb.vimort at 20:14, 25 November 2015

2015-11-25T20:14:48Z

Bpaniagua: Created page with '{| class="wikitable" | style="width:25%" |Image:NAMIC.jpg | style="width:25%" |150px | style="width:25%" |Image:UNC_uni.jpg |} ==Workshop Title Here == …'

2015-11-20T16:54:44Z

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==Workshop Title Here ==

== Introduction ==
This workshop will highlight new developments in publicly available software for image analysis and imaging based research for Dental applications.
3D image analysis continue to mandate a multidisciplinary collaborative team including clinician researchers, software engineers and computer science experts.
This hands-on workshop for Cranio Maxillo Facial applications will be using SlicerCMF2.2, a newly released package by DCBIA based in Slicer 4.5.

==Date and Location==
Tuesday November 23rd , time, at the University -- Italy.

==Workshop Content==

==Presenters==

* '''Lucia Cevidanes''' , ''Ph.D, DDS, University of Michigan''
luciacev@umich.edu

==Preparation for the workshop==

The workshop combines oral presentations and instructor-led hands-on sessions with the participants working on their own laptop computers.
All participants are required to come with their own laptop computer and install the software and datasets prior to the event. A minimum of 1 GB of RAM (4 GB is better) and a graphic accelerator with 64mb (512MB is better) of on-board graphic memory is required. Shared memory graphics boards have significantly poorer performance.

==Software==

==Data==
[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEV0M4eWJEeUhrb3c&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 1: Dicom files - They are different from the gipl files]

[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEQWJzN29BMnR2WW8&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 2: gipl files]

[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEYWE4QWRXUk5JNjg&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 3: Scan already approximated]

[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEOEVFWmVRUVpRQWM&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 4: CB segmentation]

[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPESi1pQzVkQWFFckk&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 5: CB registration]

[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPESUNRVERaY0JnXzQ&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 5a: segm Max and MD T1]

[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEWEp3ZWhkYTU4MVk&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 6: Models - CB registration]

[https://www.youtube.com/channel/UCQUtGe5KrpBt2k4mrNeHeUQ/videos DCBIA Videos - Tutorial videos for the image analysis tools]

==Other Resources==
[http://www.nitrc.org/ Neuroimaging Informatics Tools and Resources Clearinghouse (NITRC)]

[http://www.ncbi.nlm.nih.gov/pubmed?term=spharm%20pdm%20styner SPHARM-PDM publications in PubMed]

[http://www.slicer.org/slicerWiki/index.php/Main_Page Slicer user orientation]

[http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Training Slicer tutorials]

==Participant List==

@@ Line 35: / Line 35: @@
 ==Data==
-[https://drive.google.com/open?id=0B5QjlDZ88CXrR2JCQ3hyWnc4V0U Folder 1: To convert DICOM to GPIL
+[https://drive.google.com/open?id=0B5QjlDZ88CXrR2JCQ3hyWnc4V0U Folder 1: To convert DICOM to GPIL]
 [https://drive.google.com/open?id=0B5QjlDZ88CXrRkcyTFlNQUN6QkE Folder 2: To do the segmentation]

@@ Line 63: / Line 63: @@
 [http://www.ncbi.nlm.nih.gov/pubmed?term=spharm%20pdm%20styner SPHARM-PDM publications in PubMed]
-[http://www.slicer.org/slicerWiki/index.php/Main_Page Slicer user orientation]
+[https://www.slicer.org/wiki/Main_Page Slicer user orientation]
-[http://www.slicer.org/slicerWiki/index.php/Documentation/4.3/Training Slicer tutorials]
+[https://www.slicer.org/wiki/Documentation/4.3/Training Slicer tutorials]
 ==Participant List==

@@ Line 14: / Line 14: @@
 ==Date and Location==
-Tuesday November 23rd , time, at the University -- Italy.
+November 26th to november 28th , from 9:00AM to 8:00PM, at the "Università degli Studi dell'Insubria - Varese Como" -- Italy.
 ==Workshop  Content==
@@ Line 20: / Line 20: @@
 ==Presenters==
+*      '''Antonio Ruellas''' , ''Ph.D, DDS, University of Rio de Janeiro''
 *	'''Lucia Cevidanes''' , ''Ph.D, DDS, University of Michigan''
 luciacev@umich.edu
@@ Line 67: / Line 68: @@
 ==Participant List==

@@ Line 5: / Line 5: @@
 |}
-==Workshop Title Here ==
+==Cranio Maxillo Facial imaging workshop using SlicerCMF ==
@@ Line 35: / Line 35: @@
 ==Data==
-[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEV0M4eWJEeUhrb3c&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 1: Dicom files - They are different from the gipl files]
+[https://drive.google.com/open?id=0B5QjlDZ88CXrR2JCQ3hyWnc4V0U Folder 1: To convert DICOM to GPIL
-[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEQWJzN29BMnR2WW8&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 2: gipl files]
+[https://drive.google.com/open?id=0B5QjlDZ88CXrRkcyTFlNQUN6QkE Folder 2: To do the segmentation]
-[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEYWE4QWRXUk5JNjg&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 3: Scan already approximated]
+[https://drive.google.com/open?id=0B5QjlDZ88CXrRkcyTFlNQUN6QkE Folder 3: To make models]
-[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEOEVFWmVRUVpRQWM&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 4: CB segmentation]
+[https://drive.google.com/open?id=0B5QjlDZ88CXraWd6dktOZ2I2VlE Folder 4: For head orientation]
-[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPESi1pQzVkQWFFckk&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 5: CB registration]
+[https://drive.google.com/open?id=0B5QjlDZ88CXrWFNjNF9tVGlnSGc Folder 5: To apply head orientation matrix to scan]
-[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPESUNRVERaY0JnXzQ&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 5a: segm Max and MD T1]
+[https://drive.google.com/open?id=0B5QjlDZ88CXrTU5vbFBPck9aaTA Folder 6: To approximate manually]
-[https://drive.google.com/a/umich.edu/folderview?id=0Bz1Z-9rzZGPEWEp3ZWhkYTU4MVk&usp=sharing_eid&tid=0Bz1Z-9rzZGPESEhhV3hlNFdZaHc Folder 6: Models - CB registration]
+[https://drive.google.com/open?id=0B5QjlDZ88CXrZ1ltRzJWMlJFa3M Folder 7: To do voxel based registration]
 [https://www.youtube.com/channel/UCQUtGe5KrpBt2k4mrNeHeUQ/videos DCBIA Videos - Tutorial videos for the image analysis tools]