Slicer Training Volume Rendering - Revision history

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2017-07-10T18:07:20Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

Marianna: Protected "Slicer Training Volume Rendering" [edit=sysop:move=sysop]

2008-05-21T18:23:42Z

Protected "Slicer Training Volume Rendering" [edit=sysop:move=sysop]

Marianna: Unprotected "Slicer Training Volume Rendering"

2008-05-21T18:23:36Z

Unprotected "Slicer Training Volume Rendering"

Marianna: Replacing page with ''''Note:''' We are migrating this content to the slicer.org domain - The newer page is [http://www.slicer.org/slicerWiki/index.php/Slicer_Training_Vol...'

2008-05-21T18:23:27Z

Replacing page with '<big>'''Note:''' We are migrating this content to the slicer.org domain - <font color="orange">The newer page is [http://www.slicer.org/slicerWiki/index.php/Slicer_Training_Vol...'

Hliu at 16:06, 28 March 2008

2008-03-28T16:06:23Z

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2008-03-27T18:53:38Z

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2008-03-27T17:42:29Z

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2008-03-27T17:41:53Z

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2008-03-27T17:40:23Z

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2008-03-27T17:40:14Z

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← Older revision		Revision as of 18:07, 10 July 2017
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−	<big>'''Note:''' We are migrating this content to the slicer.org domain - <font color="orange">The newer page is [~~http~~://www.slicer.org/~~slicerWiki/index.php~~/Slicer_Training_Volume_Rendering here]</font></big>	+	<big>'''Note:''' We are migrating this content to the slicer.org domain - <font color="orange">The newer page is [https://www.slicer.org/wiki/Slicer_Training_Volume_Rendering here]</font></big>

← Older revision		Revision as of 18:23, 21 May 2008
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−	~~Back to [[3D_Ultrasound_Module_in_Slicer_3\|3D_Ultrasound_Module_in_Slicer_3]]~~	+	<big>'''Note:''' We are migrating this content to the slicer.org domain - <font color="orange">The newer page is [http://www.slicer.org/slicerWiki/index.php/Slicer_Training_Volume_Rendering here]</font></big>
−
−	~~= Volume Rendering =~~
−	~~== Get It Running ==~~
−	~~#To get volume rendering to work within '''3D Slicer''' we have to make sure that a '''MRML node''' with '''Volumetric Data~~''' ~~exists.~~
−	~~#If not a new set of volume data must be loaded. For this demo we will load the tutorial data found [http~~:~~//wiki.na-mic.org/Wiki/images/f/f8/Tutorial-with-dicom.zip here].~~
−	~~##'''Download and Uncompress~~''' this ~~folder~~
−	~~##In 3D Slicer go~~ to ~~'''File -> Load Scene'''~~
−	~~##Select the ''tutorial.xml''~~
−	~~#Now select the '''VolumeRendering Module'''.~~
−	~~#Select a valid volume as the '''Source Volume''' [[Image:Slicer3_OpenIGT_VolumeRendering_SelectScanner.png\|thumb\|none\|Select Scanner in Volume Rendering Module]]~~
−
−	~~The Volume Rendering will be initialized. Have patience....~~
−
−	~~== Parameters ==~~
−	~~=== Performance Triggers ===~~
−	~~[[Image:Slicer3_VolRen_Performance.png\|thumb\|right\|Volume Rendering - Performance]]~~
−	~~You can adjust the performance of volume rendering by enabling and disabling quality improvements.~~
−	~~The Volume Rendering Module has '''three performance levels'''~~
−	~~#Low Resolution Hardware Rendering (worst - fastest)~~
−	~~#Full Resolution Hardware Rendering~~
−	~~#Software Rendering (best - slowest)~~
−	~~When all of them are selected slicer uses~~ the ~~low resolution when the camera is moving or nodes in the scene are changing and when nothing is changing anymore the high resolution volume is performed.~~
−
−	~~The FPS tag lets~~ slicer ~~decide what resolution should be used to produce an interactive experience~~.
−
−	~~=== Cropping ===~~
−	~~With cropping the volume can be limited to a certain area.~~
−	~~This is useful if a surgeon only wants to see a certain part of the volume or cut at an exact plane.~~
−	~~[[Image:Slicer3_VolRen_Crop.png\|thumb\|left\|Volume Rendering~~ - ~~Cropping]]~~
−	~~This feature also comes with a integrated 3 dimensional widget to adjust the handlers on the visualization screen.~~
−
−	~~Try it out!~~
−
−	=~~== Advanced Options and the Transfer Function ===~~
−	The ~~advanced tab lets more experienced doctors do the fine tuning on the '''Transfer Functions'''.~~
−	~~[[Image:Slicer3_VolRen_Advanced.png\|thumb\|right\|Volume Rendering - Advanced]]~~
−
−	~~'''Transfer Functions''' are the basic building block of volume rendering.~~
−	~~They define the final rendering color for each voxel in the 3D grey scale data.~~
−	~~This can be used to give all tissue with the density of bone a solid white color and paint the skin tissue in a translucent pink above it.~~
−
−	~~== More Information ==~~
−	*Slicer3 Volume Rendering Module: [[Slicer3:Volume_Rendering]]
−	*Slicer3 Volume Rendering Module using [http://www.~~nvidia~~.~~com~~/~~cuda CUDA]: [[Slicer3:Volume Rendering With Cuda]~~]

← Older revision		Revision as of 16:06, 28 March 2008
Line 1:		Line 1:
		+	Back to [[3D_Ultrasound_Module_in_Slicer_3\|3D_Ultrasound_Module_in_Slicer_3]]
		+
	= Volume Rendering =		= Volume Rendering =
	== Get It Running ==		== Get It Running ==

← Older revision		Revision as of 18:53, 27 March 2008
Line 42:		Line 42:
	*Slicer3 Volume Rendering Module: [[Slicer3:Volume_Rendering]]		*Slicer3 Volume Rendering Module: [[Slicer3:Volume_Rendering]]
	*Slicer3 Volume Rendering Module using [http://www.nvidia.com/cuda CUDA]: [[Slicer3:Volume Rendering With Cuda]]		*Slicer3 Volume Rendering Module using [http://www.nvidia.com/cuda CUDA]: [[Slicer3:Volume Rendering With Cuda]]
−	~~R. A. Drebin, L. Carpenter, and P. Hanrahan. Volume rendering. pp. 6574,~~
−	~~1988. 3.1~~
−	~~[2] K. Engel, M. Kraus, and T. Ertl. High-quality pre-integrated volume rendering~~
−	~~using hardwareaccelerated pixel shading, 2001, citeseer.ist.psu.edu/~~
−	~~engel01highquality.html. 3.1.2~~
−
−	~~[3] D. T. Gering, A. Nabavi, R. Kikinis, N. Hata, J. ODonnell, W. E. L. Grimson,~~
−	~~F. A. Jolesz, P. M. Black, and W. M. W. III. An integrated visualization system~~
−	~~for surgical planning and guidance using image fusion and an open MR. J Magn~~
−	~~Reson Imag 13(6):967975, 2001. 3.4~~
−
−	~~[4] H.-R. Ke and R.-C. Chang. Ray-cast volume rendering accelerated by incremental~~
−	~~trilinear interpolation and cell templates. The Visual Computer 11:297308,~~
−	~~June 2005, http://www.springerlink.com/content/u177877621757257/. 1~~
−
−	~~[5] J. Kniss, J. Kniss, G. Kindlmann, and C. Hansen. Multidimensional transfer~~
−	~~functions for interactive volume rendering. 8(3):270285, 2002. 3.1.3~~
−
−	~~[6] J. Kniss, J. Kniss, S. Premoze, C. Hansen, P. Shirley, and A. McPherson. A~~
−	~~model for volume lighting and modeling. 9(2):150162, 2003. 3.1.4~~
−
−	~~[7] E. B. Lum, B. Wilson, and K.-L. Ma. High-quality lighting and efficient preintegration~~
−	~~for volume rendering. Joint EUROGRAPHICS - IEEE TCVG Symposium~~
−
−	~~on Visualization, 2004. 3.1.2~~
−	~~[8] K. Martin, W. Schroeder, and B. Lorensen. vtkvolumeraycastcompositefunction~~
−	~~from the vtk framework. opensource, freebsd license, http://www.vtk.org.~~
−	~~3.2.1.3~~
−	15
−	~~Bibliography~~
−
−	~~[9] N. Max, P. Hanrahan, and R. Crawfis. Area and volume coherence for efficient~~
−	~~visualization of 3d scalar functions. SIGGRAPH Comput. Graph. 24(5):2733,~~
−	~~1990. 3.1.2~~
−
−	~~[10] P. M. Novotny, S. K. Jacobsen, N. V. Vasilyev, D. T. Kettler, I. S. Salgo, P. E.~~
−	~~Dupont, P. J. D. Nido, and R. D. Howe. 3d ultrasound in robotic surgery:~~
−	~~performance evaluation with stereo displays. Int J Med Robot 2(3):279285,~~
−	~~Sep 2006, http://dx.doi.org/10.1002/rcs.102. 4~~
−
−	~~[11] P. M. Novotny, D. T. Kettler, P. Jordan, P. E. Dupont, P. J. del Nido, and~~
−	~~R. D. Howe. Stereo display of 3d ultrasound images for surgical robot guidance.~~
−	~~Conf Proc IEEE Eng Med Biol Soc 1:15091512, 2006, http://dx.doi.org/~~
−	~~10.1109/IEMBS.2006.259486. 4~~
−
−	~~[12] P. M. Novotny, J. A. Stoll, N. V. Vasilyev, P. J. del Nido, P. E. Dupont,~~
−	~~T. E. Zickler, and R. D. Howe. Gpu based real-time instrument tracking with~~
−	~~three-dimensional ultrasound. Med Image Anal 11(5):458464, Oct 2007, http:~~
−	~~//dx.doi.org/10.1016/j.media.2007.06.009. 4~~
−
−	~~[13] NVidia. NVIDIA CUDA Compute Unified Device Architecture - Programming~~
−	~~Guide. NVidia Corporation, 1.1 edition, Nov 2007, http://www.nvidia.com/~~
−	~~cuda. 1~~
−	16

@@ Line 47: / Line 47: @@
 using hardwareaccelerated pixel shading, 2001, citeseer.ist.psu.edu/
 engel01highquality.html. 3.1.2
 [3] D. T. Gering, A. Nabavi, R. Kikinis, N. Hata, J. ODonnell, W. E. L. Grimson,
 F. A. Jolesz, P. M. Black, and W. M. W. III. An integrated visualization system
 for surgical planning and guidance using image fusion and an open MR. J Magn
 Reson Imag 13(6):967975, 2001. 3.4
 [4] H.-R. Ke and R.-C. Chang. Ray-cast volume rendering accelerated by incremental
 trilinear interpolation and cell templates. The Visual Computer 11:297308,
 June 2005, http://www.springerlink.com/content/u177877621757257/. 1
 [5] J. Kniss, J. Kniss, G. Kindlmann, and C. Hansen. Multidimensional transfer
 functions for interactive volume rendering. 8(3):270285, 2002. 3.1.3
 [6] J. Kniss, J. Kniss, S. Premoze, C. Hansen, P. Shirley, and A. McPherson. A
 model for volume lighting and modeling. 9(2):150162, 2003. 3.1.4
 [7] E. B. Lum, B. Wilson, and K.-L. Ma. High-quality lighting and efficient preintegration
 for volume rendering. Joint EUROGRAPHICS - IEEE TCVG Symposium
 on Visualization, 2004. 3.1.2
 [8] K. Martin, W. Schroeder, and B. Lorensen. vtkvolumeraycastcompositefunction
@@ Line 66: / Line 72: @@
 Bibliography
 [9] N. Max, P. Hanrahan, and R. Crawfis. Area and volume coherence for efficient
 visualization of 3d scalar functions. SIGGRAPH Comput. Graph. 24(5):2733,
 . 3.1.2
 [10] P. M. Novotny, S. K. Jacobsen, N. V. Vasilyev, D. T. Kettler, I. S. Salgo, P. E.
 Dupont, P. J. D. Nido, and R. D. Howe. 3d ultrasound in robotic surgery:
 performance evaluation with stereo displays. Int J Med Robot 2(3):279285,
 Sep 2006, http://dx.doi.org/10.1002/rcs.102. 4
 [11] P. M. Novotny, D. T. Kettler, P. Jordan, P. E. Dupont, P. J. del Nido, and
 R. D. Howe. Stereo display of 3d ultrasound images for surgical robot guidance.
 Conf Proc IEEE Eng Med Biol Soc 1:15091512, 2006, http://dx.doi.org/
 .1109/IEMBS.2006.259486. 4
 [12] P. M. Novotny, J. A. Stoll, N. V. Vasilyev, P. J. del Nido, P. E. Dupont,
 T. E. Zickler, and R. D. Howe. Gpu based real-time instrument tracking with
 three-dimensional ultrasound. Med Image Anal 11(5):458464, Oct 2007, http:
 //dx.doi.org/10.1016/j.media.2007.06.009. 4
 [13] NVidia. NVIDIA CUDA Compute Unified Device Architecture - Programming
 Guide. NVidia Corporation, 1.1 edition, Nov 2007, http://www.nvidia.com/
 cuda. 1

← Older revision	Revision as of 18:23, 21 May 2008
(No difference)

← Older revision		Revision as of 17:41, 27 March 2008
Line 42:		Line 42:
	*Slicer3 Volume Rendering Module: [[Slicer3:Volume_Rendering]]		*Slicer3 Volume Rendering Module: [[Slicer3:Volume_Rendering]]
	*Slicer3 Volume Rendering Module using [http://www.nvidia.com/cuda CUDA]: [[Slicer3:Volume Rendering With Cuda]]		*Slicer3 Volume Rendering Module using [http://www.nvidia.com/cuda CUDA]: [[Slicer3:Volume Rendering With Cuda]]
		+	R. A. Drebin, L. Carpenter, and P. Hanrahan. Volume rendering. pp. 6574,
		+	1988. 3.1
		+	[2] K. Engel, M. Kraus, and T. Ertl. High-quality pre-integrated volume rendering
		+	using hardwareaccelerated pixel shading, 2001, citeseer.ist.psu.edu/
		+	engel01highquality.html. 3.1.2
		+	[3] D. T. Gering, A. Nabavi, R. Kikinis, N. Hata, J. ODonnell, W. E. L. Grimson,
		+	F. A. Jolesz, P. M. Black, and W. M. W. III. An integrated visualization system
		+	for surgical planning and guidance using image fusion and an open MR. J Magn
		+	Reson Imag 13(6):967975, 2001. 3.4
		+	[4] H.-R. Ke and R.-C. Chang. Ray-cast volume rendering accelerated by incremental
		+	trilinear interpolation and cell templates. The Visual Computer 11:297308,
		+	June 2005, http://www.springerlink.com/content/u177877621757257/. 1
		+	[5] J. Kniss, J. Kniss, G. Kindlmann, and C. Hansen. Multidimensional transfer
		+	functions for interactive volume rendering. 8(3):270285, 2002. 3.1.3
		+	[6] J. Kniss, J. Kniss, S. Premoze, C. Hansen, P. Shirley, and A. McPherson. A
		+	model for volume lighting and modeling. 9(2):150162, 2003. 3.1.4
		+	[7] E. B. Lum, B. Wilson, and K.-L. Ma. High-quality lighting and efficient preintegration
		+	for volume rendering. Joint EUROGRAPHICS - IEEE TCVG Symposium
		+	on Visualization, 2004. 3.1.2
		+	[8] K. Martin, W. Schroeder, and B. Lorensen. vtkvolumeraycastcompositefunction
		+	from the vtk framework. opensource, freebsd license, http://www.vtk.org.
		+	3.2.1.3
		+	15
		+	Bibliography
		+	[9] N. Max, P. Hanrahan, and R. Crawfis. Area and volume coherence for efficient
		+	visualization of 3d scalar functions. SIGGRAPH Comput. Graph. 24(5):2733,
		+	1990. 3.1.2
		+	[10] P. M. Novotny, S. K. Jacobsen, N. V. Vasilyev, D. T. Kettler, I. S. Salgo, P. E.
		+	Dupont, P. J. D. Nido, and R. D. Howe. 3d ultrasound in robotic surgery:
		+	performance evaluation with stereo displays. Int J Med Robot 2(3):279285,
		+	Sep 2006, http://dx.doi.org/10.1002/rcs.102. 4
		+	[11] P. M. Novotny, D. T. Kettler, P. Jordan, P. E. Dupont, P. J. del Nido, and
		+	R. D. Howe. Stereo display of 3d ultrasound images for surgical robot guidance.
		+	Conf Proc IEEE Eng Med Biol Soc 1:15091512, 2006, http://dx.doi.org/
		+	10.1109/IEMBS.2006.259486. 4
		+	[12] P. M. Novotny, J. A. Stoll, N. V. Vasilyev, P. J. del Nido, P. E. Dupont,
		+	T. E. Zickler, and R. D. Howe. Gpu based real-time instrument tracking with
		+	three-dimensional ultrasound. Med Image Anal 11(5):458464, Oct 2007, http:
		+	//dx.doi.org/10.1016/j.media.2007.06.009. 4
		+	[13] NVidia. NVIDIA CUDA Compute Unified Device Architecture - Programming
		+	Guide. NVidia Corporation, 1.1 edition, Nov 2007, http://www.nvidia.com/
		+	cuda. 1
		+	16

← Older revision		Revision as of 17:40, 27 March 2008
Line 42:		Line 42:
	*Slicer3 Volume Rendering Module: [[Slicer3:Volume_Rendering]]		*Slicer3 Volume Rendering Module: [[Slicer3:Volume_Rendering]]
	*Slicer3 Volume Rendering Module using [http://www.nvidia.com/cuda CUDA]: [[Slicer3:Volume Rendering With Cuda]]		*Slicer3 Volume Rendering Module using [http://www.nvidia.com/cuda CUDA]: [[Slicer3:Volume Rendering With Cuda]]
−	*Transfer Functions

@@ Line 40: / Line 40: @@
 == More Information ==
-*Slicer3 Volume Rendering Module [[Slicer3:Volume_Rendering]]
+*Slicer3 Volume Rendering Module: [[Slicer3:Volume_Rendering]]
-*Slicer3 Volume Rendering Module using [http://www.nvidia.com/cuda CUDA] [[Slicer3:Volume Rendering With Cuda]]
+*Slicer3 Volume Rendering Module using [http://www.nvidia.com/cuda CUDA]: [[Slicer3:Volume Rendering With Cuda]]