Stanford SIMBIOS: Whole Body Segmentation for Simulation - Revision history

Spal5 at 17:11, 9 January 2009

2009-01-09T17:11:51Z

2009-01-08T20:47:41Z

2009-01-08T20:47:00Z

2008-12-31T20:23:45Z

2008-12-15T22:31:10Z

2008-12-15T22:24:56Z

2008-12-15T22:01:51Z

2008-12-15T22:00:15Z

2008-12-15T21:56:35Z

2008-12-15T21:53:12Z

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 <h1>Progress</h1>
 * Compiled a set of 5 knee MRI data-sets with manually segmented volumes.
-* Evaluated registration algorithms to develop an averaged atlas of the knee joint.
+* Evaluated registration algorithms to develop an averaged atlas of the knee joint.  We evaluated the rigid and affine registrations techniques in Slicer, and attempted a diffeomorphic deamons algorithm to align multiple data-sets.
-* Evaluated EMSegmenter to create atlas-independent model creation of the distal femur bone.
+* Evaluated EMSegmenter to create atlas-independent image segmentation.
 </div>

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 * Compiled a set of 5 knee MRI data-sets with manually segmented volumes.
 * Evaluated registration algorithms to develop an averaged atlas of the knee joint.
-* Evaluated EMSegmenter to create atlas-independent model creation of the femur bone.
+* Evaluated EMSegmenter to create atlas-independent model creation of the distal femur bone.
 </div>

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 <div style="width: 27%; float: left;">
 <h1>Progress</h1>
 </div>

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 |}
 ===Key Investigators===
-* Stanford: Harish Doddi, Saikat Pal, and Scott Delp
+* Stanford: Harish Doddi, Saikat Pal
 * WashU: Daniel Marcus
-* Harvard: Tina Kapur, and Ron Kikinis
+* Harvard:  Ron Kikinis
 * Steve Pieper, Isomics, Inc.

@@ Line 7: / Line 7: @@
 * Stanford: Harish Doddi, Saikat Pal, and Scott Delp
 * WashU: Daniel Marcus
-* Harvard: ??
+* Harvard: Tina Kapur, and Ron Kikinis
 * Steve Pieper, Isomics, Inc.

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 <div style="width: 27%; float: left; padding-right: 3%;">
 <h1>Approach, Plan</h1>
-Investigate the existing functionality of EMSegementer to extract whole body models from CT and MR datasets.  Initial efforts will be focused on developing atlases of specific joints (e.g. the knee) and evaluating EMSegmenter algorithms.  The plan is to have imported MRI knee geometries in EMSegmenter and create an average atlas before the project week.  During the project week, the EMSegmenter algorithm will be tested on a specific subject geometry.
+Investigate the existing functionality of EMSegementer to extract whole body models from CT and MR datasets.  Initial efforts will be focused on developing atlases of specific joints (e.g. the knee) and evaluating EMSegmenter algorithms.  The plan is to have imported MRI knee geometries in EMSegmenter and create an average atlas before the project week.  During the project week, the EMSegmenter algorithm will be tested on a specific subject geometries.
 </div>

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 {|
 |[[Image:NAMIC-SLC.jpg|thumb|320px|Return to [[2009_Winter_Project_Week|Project Week Main Page]] ]]
-|[[Image:ct.jpg|thumb|190px|Example whole-body CT dataset from WashU displayed in 3D Slicer.]]
+|[[Image:ct.jpg|thumb|320px|Example whole-body CT dataset from WashU displayed in 3D Slicer.]]
-|[[Image:sim.jpg|thumb|220px|Articulated musculoskeletal models.]]
+|[[Image:sim.jpg|thumb|320px|Articulated musculoskeletal models.]]
 |}
 ===Key Investigators===
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 * Harvard: ??
-===Tutorial===
+===Project===
 __NOTOC__
 <div style="margin: 20px;">