Tests of Iowa Workshop tutorials - Revision history

JChris.FillionR: Fix MediaWiki formatting issue discovered while converting to GitHub Flavored Markdown using pandoc (via https://github.com/outofcontrol/mediawiki-to-gfm)

2023-04-11T19:23:01Z

Fix MediaWiki formatting issue discovered while converting to GitHub Flavored Markdown using pandoc (via https://github.com/outofcontrol/mediawiki-to-gfm)

Grundlett: Text replacement - "[http://www.na-mic.org/Wiki/images/" to "[https://na-mic.org/w/images/"

2017-07-10T18:27:07Z

Text replacement - "[http://www.na-mic.org/Wiki/images/" to "[https://na-mic.org/w/images/"

BenLg at 22:34, 19 March 2012

2012-03-19T22:34:21Z

BenLg at 22:33, 19 March 2012

2012-03-19T22:33:52Z

BenLg at 22:25, 19 March 2012

2012-03-19T22:25:00Z

BenLg at 21:37, 19 March 2012

2012-03-19T21:37:17Z

BenLg at 21:33, 19 March 2012

2012-03-19T21:33:39Z

BenLg at 21:29, 19 March 2012

2012-03-19T21:29:48Z

BenLg at 21:29, 19 March 2012

2012-03-19T21:29:13Z

BenLg at 21:23, 19 March 2012

2012-03-19T21:23:54Z

@@ Line 1: / Line 1: @@
 [[Iowa 2012 Workshop Materials]]
-<table>
+{| class="wikitable sortable labelpage labelpagetable" border="1"
 |-
 |'''Tutorial Name'''||'''Tutorial Data'''||'''Platform'''||'''Slicer Version'''||'''Test Date'''||'''Test Author & Comments/Mantis Links'''
@@ Line 118: / Line 117: @@
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 |}
 * [http://www.na-mic.org/Wiki/index.php/Slicer-4.1 Back to Slicer4.1 Feb 27 page]

@@ Line 18: / Line 18: @@
 |[[media:DTI_Analysis_Tutorial_Slicer4.1_SPujol.pdf | Slicer4.1 DTI Tutorial]]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Linux 64 (debug) || ||  ||
 |-
-|[http://www.na-mic.org/Wiki/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Linux 64 (debug)|| r19517 || 03/07/2012 ||
+|[https://na-mic.org/w/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Linux 64 (debug)|| r19517 || 03/07/2012 ||
 Nicole: <s>[http://na-mic.org/Bug/view.php?id=1793 1793]</s>. <s>[http://na-mic.org/Bug/view.php?id=1795 1795]</s>
 |-
-|[http://www.na-mic.org/Wiki/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Windows 7 64b (package)|| r19577 || 03/13/2012 ||
+|[https://na-mic.org/w/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Windows 7 64b (package)|| r19577 || 03/13/2012 ||
 Julien <br>pdf is 95MB !?!?<br>Page 22, Popup look is now different<br>Page 23, in red slice only the popup should still be up (didn't unpin)<br>Page 25: Diffusion Tensor Estimation has been renamed into DWI to DTI estimation<br>Page 25: dwi is already selected as Input DWI<br>Page 25: Minor Bug ! It stays "scheduled" for >5secs, not sure why<br>Page 26: Popup looks different now<br>Page 30: shouldn't labda1~labda2 >> lambda3 look more like a smarties ?<br>Page 32: typo connect ->connects<br>Page 36: Need to click on ">>" button first<br>Page 41: Bug ! After apply, the foreground image is reset to none, need to manually set it back to dti<br>Page 46: After selecting FractionalAnisotropy, Auto WL is automatically selected<br>Page 48: You might want to include screenshot of Link button again<br>Page 51: No need to move the mouse in 3D view, it automatically refreshes. If not, then a bug must be reported<br>Page 57: 1 bullet point has no . at the end(for information, there is no . in the other slides.<br>Page 60: Advice to use the right/left arrow keys to slice through?<br>Page 65: No axial slice displayed in 3D<br>Page 74: explain how to rename?<br>Page 78: explain to go to Annotation module again ?<br>Page 79: no need to turn off and on, it automatically refreshed when I placed the fiducial. If not, then a bug must be reported.<br>Page 81: explain where to place fiducial.<br>Page 82: Bug, it doesn't recompute automatically
 |-
 |-
-|[http://www.na-mic.org/Wiki/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Windows 7 64b (package) || 4.1.0-rc1-2012-03-17 <br> r19637 || 03/19/2012 ||
+|[https://na-mic.org/w/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Windows 7 64b (package) || 4.1.0-rc1-2012-03-17 <br> r19637 || 03/19/2012 ||
 Benjamin - Work as expected <br> Setting a low (<4) scpacing value, in Glyphs, can turn your computer out of memories
 |-
-|[http://www.na-mic.org/Wiki/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Linux Unbuntu 64 (package) || 4.1.0-rc1-2012-03-17 <br> r19635 || 03/19/2012 || Benjamin - Work as expected <br> Setting a low (<4) scpacing value, in Glyphs, can turn your computer out of memories
+|[https://na-mic.org/w/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Linux Unbuntu 64 (package) || 4.1.0-rc1-2012-03-17 <br> r19635 || 03/19/2012 || Benjamin - Work as expected <br> Setting a low (<4) scpacing value, in Glyphs, can turn your computer out of memories
 |-
-|[http://www.na-mic.org/Wiki/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Mac OSX 10.7 (package) || 4.1.0-rc1-2012-03-17 <br> r19635 || 03/19/2012 || Jc - Work as expected
+|[https://na-mic.org/w/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Mac OSX 10.7 (package) || 4.1.0-rc1-2012-03-17 <br> r19635 || 03/19/2012 || Jc - Work as expected
 |-
-|[http://www.na-mic.org/Wiki/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Windows XP 32b || Slicer 4.1.0 rc1 (r19609) || 03/15/2012 ||
+|[https://na-mic.org/w/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Windows XP 32b || Slicer 4.1.0 rc1 (r19609) || 03/15/2012 ||
 Julien <br>no link for the data mentioned in the tutorial<br>No mention to what Slicer version the tutorial is compatible with<br>Page1: Slicer Logo is 4.0, does it mean it's compatible with 4.0 ? no<br>Page 10: I have 100modules (from log messages dialog CTRL+0)<br>Page 19: typo: appears in the 2D viewer'''s'''<br>Page 22: Add "fit image to window" icon<br>Page 41: Odd black pixels in fa volume (see email)<br>Page 58: Add arrow to indicates how to change to yellow layout ?<br>Page 60: icon of the draw tool ? I first used the paint tool instead<br>Page 64: no "Minimum Length", only "Minimum Path Length". Bug ? why "Maximum Length" is not also "Maximum Path Length" ?<br>Page 64: Bug: why only Integration Step Length is (mm) but not others?<br>Page 66: Click on "Glyph" -> Crash (Slicer= 690Mo)
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@@ Line 25: / Line 25: @@
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 |-
-|[http://www.na-mic.org/Wiki/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Windows 7 64b (package) || 4.1.0-rc1-2012-03-17 <br> r19635 || 03/19/2012 ||
+|[http://www.na-mic.org/Wiki/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Windows 7 64b (package) || 4.1.0-rc1-2012-03-17 <br> r19637 || 03/19/2012 ||
 Benjamin - Work as expected <br> Setting a low (<4) scpacing value, in Glyphs, can turn your computer out of memories
 |-
-|[http://www.na-mic.org/Wiki/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Linux Unbuntu 64 (package) || 4.1.0-rc1-2012-03-17 <br> r19637 || 03/19/2012 || Benjamin - Work as expected <br> Setting a low (<4) scpacing value, in Glyphs, can turn your computer out of memories
+|[http://www.na-mic.org/Wiki/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Linux Unbuntu 64 (package) || 4.1.0-rc1-2012-03-17 <br> r19635 || 03/19/2012 || Benjamin - Work as expected <br> Setting a low (<4) scpacing value, in Glyphs, can turn your computer out of memories
 |-
 |[http://www.na-mic.org/Wiki/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Mac OSX 10.7 (package) || 4.1.0-rc1-2012-03-17 <br> r19635 || 03/19/2012 || Jc - Work as expected

@@ Line 25: / Line 25: @@
 |-
 |-
-|[http://www.na-mic.org/Wiki/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Windows 7 64b (package) || 4.1.0-rc1-2012-03-17 <br> r19637 || 03/19/2012 ||
+|[http://www.na-mic.org/Wiki/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Windows 7 64b (package) || 4.1.0-rc1-2012-03-17 <br> r19635 || 03/19/2012 ||
 Benjamin - Work as expected <br> Setting a low (<4) scpacing value, in Glyphs, can turn your computer out of memories
 |-
-|[http://www.na-mic.org/Wiki/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Linux Unbuntu 64 (package) || 4.1.0-rc1-2012-03-17 <br> r19637 || 03/19/2012 ||
+|[http://www.na-mic.org/Wiki/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Linux Unbuntu 64 (package) || 4.1.0-rc1-2012-03-17 <br> r19637 || 03/19/2012 || Benjamin - Work as expected <br> Setting a low (<4) scpacing value, in Glyphs, can turn your computer out of memories
 |-
-|[http://www.na-mic.org/Wiki/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Linux Mac OSX 10.7 (package) || 4.1.0-rc1-2012-03-17 <br> r19637 || 03/19/2012 ||
+|[http://www.na-mic.org/Wiki/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Mac OSX 10.7 (package) || 4.1.0-rc1-2012-03-17 <br> r19635 || 03/19/2012 || Jc - Work as expected
 |-
 |[http://www.na-mic.org/Wiki/images/e/e4/DTI_Analysis_Tutorial_SoniaPujol_SPIE2012.pdf Slicer4 DTI Tutorial]||[http://www.na-mic.org/Wiki/index.php/File:DiffusionMRI_tutorialData.zip Diffusion Data] || Windows XP 32b || Slicer 4.1.0 rc1 (r19609) || 03/15/2012 ||
@@ Line 55: / Line 53: @@
 |-
 |[http://www.na-mic.org/Wiki/index.php/File:HelloPython-ProgrammingTutorial_spujol-pieper-2012-03-15.pdf HelloPython Tutorial]
-||[http://www.na-mic.org/Wiki/index.php/File:HelloPythonData.zip HelloPythonDataset] || Windows 7 64b (package) || 4.1.0-rc1-2012-03-17 <br> r19635 || 03/19/2012 ||
+||[http://www.na-mic.org/Wiki/index.php/File:HelloPythonData.zip HelloPythonDataset] || Windows 7 64b (package) || 4.1.0-rc1-2012-03-17 <br> r19637 || 03/19/2012 ||
 Benjamin - Work as expected
 |-
@@ Line 87: / Line 85: @@
 |-
 |[http://www.na-mic.org/Wiki/index.php/File:WhiteMatterExplorationNeurosurgicalPlanning_SoniaPujol.pdf Neurosurgical Planning Tutorial]
-||[[media:WhiteMatterExplorationData.zip‎| Neurosurgical Planning dataset]] || Windows 7 (package) || 4.1.0-rc1-2012-03-17 <br> r19635 || 03/19/2012 || Benjamin - worked as expected
+||[[media:WhiteMatterExplorationData.zip‎| Neurosurgical Planning dataset]] || Windows 7 (package) || 4.1.0-rc1-2012-03-17 <br> r19637 || 03/19/2012 || Benjamin - worked as expected
 |-
 |[http://www.na-mic.org/Wiki/index.php/File:WhiteMatterExplorationNeurosurgicalPlanning_SoniaPujol.pdf Neurosurgical Planning Tutorial]
@@ Line 112: / Line 110: @@
 |-
 |[http://www.na-mic.org/Wiki/index.php/File:DataLoadingAndVisualizationSlicer4_SoniaPujol.pdf Data Loading and 3DVisualization]
-||[[media:3DVisualizationData.zip‎| 3D Visualization dataset]] || Windows 7 64b (package) || 4.1.0-rc1-2012-03-17 <br> r19635 || 03/19/2012 ||
+||[[media:3DVisualizationData.zip‎| 3D Visualization dataset]] || Windows 7 64b (package) || 4.1.0-rc1-2012-03-17 <br> r19637 || 03/19/2012 ||
 Benjamin - No Crash <br> Loading Scene - Image are not scaled all the time in the Slice views (random)-
 |-

@@ Line 117: / Line 117: @@
 |[http://www.na-mic.org/Wiki/index.php/File:DataLoadingAndVisualizationSlicer4_SoniaPujol.pdf Data Loading and 3DVisualization]
 ||[[media:3DVisualizationData.zip‎| 3D Visualization dataset]] || Mac OSX 10.7 (package) || 4.1.0-rc1-2012-03-17 <br> r19635 || 03/19/2012 ||
-Jc - <br> Cras at exit during the first part but can't reproduce <br> Loading Scene - Image are not scaled all the time in the Slice views (random)-
+Jc - <br> Crash at exit during the first part but can't reproduce <br> Loading Scene - Image are not scaled all the time in the Slice views (random)-
 |-
 |}

@@ Line 109: / Line 109: @@
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 |[http://www.na-mic.org/Wiki/index.php/File:DataLoadingAndVisualizationSlicer4_SoniaPujol.pdf Data Loading and 3DVisualization]
-||[[media:3DVisualizationData.zip‎| 3D Visualization dataset]] || Linux Ubuntu 64 ||  ||  ||
+||[[media:3DVisualizationData.zip‎| 3D Visualization dataset]] || Linux Ubuntu 64 (package) || 4.1.0-rc1-2012-03-17 <br> r19635 || 03/19/2012 ||
 |-
 |[http://www.na-mic.org/Wiki/index.php/File:DataLoadingAndVisualizationSlicer4_SoniaPujol.pdf Data Loading and 3DVisualization]