Training:NLM Workshop 2006 - Revision history

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2017-07-10T18:07:37Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

Melonakos at 19:33, 6 November 2008

2008-11-06T19:33:58Z

Andy: Update from Wiki

2006-12-18T13:25:22Z

Update from Wiki

Andy: Update from Wiki

2006-12-18T13:25:21Z

Update from Wiki

New page

=== Preliminary Program ===

== Organization ==

NIH Host:

* TBD

NA-MIC Lead:

* Sonia Pujol

== Training Workshop Participants ==

Clinicians and biomedical science researchers interested in training in 3DSlicer, an open-source software for visualization and analysis of medical imaging data.

== Training Workshop Logistics ==

* To sign-up for this event, send an e-mail to Sonia Pujol (spujol at bwh.harvard.edu) with your contact information, the characteristics of the computer you will be using for the workshop (OS, RAM, Processor), and any specific training requests.
* The workshop will be held on July 19 at the National Institutes of Health in Bethesda, MD. Location to be determined shortly.

== Preparation for the Training Workshop -- ''Important Information for all attendees'' ==

All participants must come with their own PC, Linux or MacOS 10.4 laptop computer. Please complete the following items prior to the workshop. Support will be provided as requested.

* Software Installation: Please install the newest version of the Slicer program [[Slicer:Slicer2.6_Getting_Started|Slicer2.6 ]] appropriate to the computer you will be bringing to the workshop.
* Data to Download: Please install the tutorial data [http://share.spl.harvard.edu/share/birn/public/software/tutorial-with-dicom.zip tutorial-with-dicom.zip].

== Draft Agenda 9:00 AM - 5:00 PM ==

* 9:00 am - 9:30 am '''Goals of Workshop, Introduction to the NAMIC Kit - People-Introductions '''(Sonia Pujol)
* 9:30 am - 9:45 am Preliminary session: checking for software and data installation.
* 9:45 am - 11:00 am '''Slicer Basics - Hands-on Session 1 '''(Sonia Pujol)
** Slicer Interface Overview
** Loading Data: Volumes, Models, Scenes
** Interacting with Images and Models
* 11:00 am - 11:15 am Coffee-break
* 11:15 am - 12:15 pm '''Slicer Basics - Hands-on Session 2 '''(Sonia Pujol)
** Saving Volumes
** Saving Models
** Saving Scenes
* 12:15 pm - 1:30 pm '''Lunch Break'''
* 1:30 pm - 4:00 pm '''Slicer Advanced - Hands-on Session 3 '''(Sonia Pujol)
** Nrrd file format
** Diffusion Tensor Imaging
* 4:00 pm - 4:15 pm Coffee-break
* 4:15 pm - 4:45 pm Users Feedback
* 4:45 pm - 5:00 pm '''Overview of Slicer 3.0 and Conclusion '''

@@ Line 32: / Line 32: @@
 Please complete the following items prior to the workshop. Support will be provided as requested.
-* '''Software Installation'''<nowiki>: Please install the newest release of the Slicer program </nowiki>[http://www.slicer.org/slicerWiki/index.php/Slicer:Slicer2.6_Getting_Started Slicer2.6] appropriate to the computer you will be bringing to the workshop.
+* '''Software Installation'''<nowiki>: Please install the newest release of the Slicer program </nowiki>[https://www.slicer.org/wiki/Slicer:Slicer2.6_Getting_Started Slicer2.6] appropriate to the computer you will be bringing to the workshop.
 NOTE: Intel based Macs will be supported on an experimental basis. Mac users please be sure to install the X11 application (available from the Mac OS X install disks).

@@ Line 32: / Line 32: @@
 Please complete the following items prior to the workshop. Support will be provided as requested.
-* '''Software Installation'''<nowiki>: Please install the newest release of the Slicer program </nowiki>[[Slicer:Slicer2.6_Getting_Started|Slicer2.6 ]] appropriate to the computer you will be bringing to the workshop.
+* '''Software Installation'''<nowiki>: Please install the newest release of the Slicer program </nowiki>[http://www.slicer.org/slicerWiki/index.php/Slicer:Slicer2.6_Getting_Started Slicer2.6] appropriate to the computer you will be bringing to the workshop.
 NOTE: Intel based Macs will be supported on an experimental basis. Mac users please be sure to install the X11 application (available from the Mac OS X install disks).

@@ Line 1: / Line 1: @@
-=== Preliminary Program ===
+== Organization ==
-== Organization ==
+This workshop is hosted by the National Institute of General Medical Sciences (NIGMS).
-NIH Host:
+NIH Lead:
-* TBD
+* Dr. Michael Ackerman, NLM
 NA-MIC Lead:
-* Sonia Pujol
+* Dr. Sonia Pujol, BWH
 == Training Workshop Participants ==
-Clinicians and biomedical science researchers interested in training in 3DSlicer, an open-source software for visualization and analysis of medical imaging data.
+Clinicians and biomedical science researchers interested in training in 3DSlicer, an open-source software for visualization and analysis of medical imaging data. [http://www.surveymonkey.com/Users/17397552/Surveys/692042009626/F5F42C4B-1178-423E-886C-2E16925228E3.asp?U=692042009626&DO_NOT_COPY_THIS_LINK NA-MIC survey]
 == Training Workshop Logistics ==
-* To sign-up for this event, send an e-mail to Sonia Pujol (spujol at bwh.harvard.edu) with your contact information, the characteristics of the computer you will be using for the workshop (OS, RAM, Processor), and any specific training requests.
+* '''To sign-up for this event, send an e-mail to Dr. Sonia Pujol (spujol at bwh.harvard.edu)'''
-* The workshop will be held on July 19 at the National Institutes of Health in Bethesda, MD. Location to be determined shortly.
-== Preparation for the Training Workshop -- ''Important Information for all attendees'' ==
+Please check the [http://www.nih.gov/about/images/072102campusaccess.gif NIH Campus map] for directions. Please allow for time to go through the security check (like at the airport).
-All participants must come with their own PC, Linux or MacOS 10.4 laptop computer. Please complete the following items prior to the workshop. Support will be provided as requested.
+=== Preparation for the Training Workshop -- ''Important Information for all attendees'' ===
-* Software Installation: Please install the newest version of the Slicer program [[Slicer:Slicer2.6_Getting_Started|Slicer2.6 ]] appropriate to the computer you will be bringing to the workshop.
+<span style="background-color: yellow">'''This is hands-on training. All participants must come with their own computer and install our software and data. PC, Linux or MacOS 10.4 computers will work. A minimum of 512MB of RAM and a dedicated graphic accelerator with 64mb of on board graphic memory are recommended.'''</span><br />
-== Draft Agenda 9:00 AM - 5:00 PM ==
+Please complete the following items prior to the workshop. Support will be provided as requested.
-* 9:00 am - 9:30 am '''Goals of Workshop, Introduction to the NAMIC Kit - People-Introductions '''(Sonia Pujol)
+* '''Software Installation'''<nowiki>: Please install the newest release of the Slicer program </nowiki>[[Slicer:Slicer2.6_Getting_Started|Slicer2.6 ]] appropriate to the computer you will be bringing to the workshop.
 * 9:30 am - 9:45 am Preliminary session: checking for software and data installation.
-* 9:45 am - 11:00 am '''Slicer Basics - Hands-on Session 1 '''(Sonia Pujol)
+* 9:45 am - 11:00 am '''Slicer Basics - [[Media:SlicerTraining1_LoadingAndViewingData_NCBC_July19.ppt| Hands-on Session 1]] (Sonia Pujol) '''
 ** Slicer Interface Overview
 ** Loading Data: Volumes, Models, Scenes
 ** Interacting with Images and Models
 * 11:00 am - 11:15 am Coffee-break
-* 11:15 am - 12:15 pm '''Slicer Basics - Hands-on Session 2 '''(Sonia Pujol)
+* 11:15 am - 12:15 pm '''Slicer Basics - [[Media:SlicerTraining2_SavingData_NCBC_July19.ppt| Hands-on Session 2]] (Sonia Pujol)'''
 ** Saving Volumes
 ** Saving Models
 ** Saving Scenes
 * 12:15 pm - 1:30 pm '''Lunch Break'''
-* 1:30 pm - 4:00 pm '''Slicer Advanced - Hands-on Session 3 '''(Sonia Pujol)
+* 1:30 pm - 3:00 pm '''Slicer Advanced - [[Media:SlicerTraining3_NrrdDWI_NCBC_July19.ppt| Hands-on Session 3]] (Sonia Pujol) '''
-** Nrrd file format
+** Diffusion Weighted Imaging tools within Slicer: Nrrd file format
-** Diffusion Tensor Imaging
+* 3:00 pm - 3:15 pm Coffee Break
-* 4:00 pm - 4:15 pm Coffee-break
+* 3:15 pm - 5:15 pm '''Slicer Advanced - [[Media:SlicerTraining4_DTMRI_NCBC_July19.ppt| Hands-on Session 4]] (Sonia Pujol)'''
-* 4:15 pm - 4:45 pm Users Feedback
+** Diffusion Weighted Imaging tools within Slicer: DTI processing and visualization
-* 4:45 pm - 5:00 pm '''Overview of Slicer 3.0 and Conclusion '''
+* 5:15 pm - 5:30 pm '''Feedback by participants and Conclusion '''(Sonia Pujol)