Training:User Workshop Fall HCNR 2006 - Revision history

Grundlett: Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

2017-07-10T18:07:15Z

Text replacement - "http://www.slicer.org/slicerWiki/index.php/" to "https://www.slicer.org/wiki/"

Melonakos at 19:35, 6 November 2008

2008-11-06T19:35:33Z

Tkapur: /* '''Training''' '''Workshop''' Logistics */

2007-07-17T13:46:53Z

'''Training''' '''Workshop''' Logistics

Tkapur: /* '''Training''' '''Workshop''' Logistics */

2007-07-17T13:46:38Z

'''Training''' '''Workshop''' Logistics

Tkapur: /* '''Training''' '''Workshop''' Logistics */

2007-07-17T13:46:13Z

'''Training''' '''Workshop''' Logistics

Zack at 21:08, 5 January 2007

2007-01-05T21:08:52Z

Zack: Update from Wiki

2007-01-05T18:34:31Z

Update from Wiki

New page

<div class="thumb tright"><div style="width:193px;">[[Image:HCNR_logo_cbd.jpg|[[Image:HCNR_logo_cbd.jpg]]]]<div class="thumbcaption">[[Image:Slicer-training-2006-11-01.png|[[Image:250px-Slicer-training-2006-11-01.png]]]]</span></span>

<br />

== Organization ==

<div class="thumb tright"><div style="width:96px;">[[Image:Nac.png|[[Image:Nac.png]]]]<div class="thumbcaption">[http://www.spl.harvard.edu/nac Neuroimage Analysis Center]</div></div></div>

'''HCNR''' Lead:

* Sandy Wells, Ph.D. - Andrew Lowe, MPA

NA-MIC Lead:

* Sonia Pujol, Ph.D.

spujol at bwh.harvard.edu

== '''Training''' '''Workshop''' Participants ==

Clinicians and biomedical science researchers interested in '''training''' in 3DSlicer, an open-source software for visualization and analysis of medical image data, for the specific purpose of analyzing Diffusion Weighted Imaging data. [http://www.surveymonkey.com/Users/17397552/Surveys/692042009626/F5F42C4B-1178-423E-886C-2E16925228E3.asp?U=692042009626&DO_NOT_COPY_THIS_LINK survey]

== '''Training''' '''Workshop''' Logistics ==

* The [/Wiki/images/8/83/DTI_CourseDescription.doc '''workshop''' ]will be held on '''Wednesday November 1st, '''2006'''''' in the Demo room at the Surgical Planning Laboratory facility on Boylston Street, Boston MA. Please check [http://splweb.bwh.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street, Boston, MA] for directions.
* To sign-up for this event, please complete the [/Wiki/images/5/5e/Nov1_2006_DTI_Training_Workshop_registration_form.doc registration form ] and return it to the Harvard Center for Neurodegeneration and Repair ('''HCNR'''). (''Fax Number: 617 432 3364'')

=== Preparation for the '''Training''' '''Workshop''' -- ''Important Information for all attendees'' ===

<span style="background-color: yellow">'''This is hands-on '''training'''. All participants must come with their own computer and install our software and data. PC, Linux or MacOS 10.4 computers will work. A minimum of 512MB of RAM and a dedicated graphic accelerator with 64mb of on board graphic memory are recommended.'''</span><br />

Please complete the following items prior to the '''workshop'''. Support will be provided as requested.

* <span style="background-color: orange">'''Software Installation'''</span><nowiki>: Please install the newest release of the Slicer program </nowiki>[[Slicer:Slicer2.6_Getting_Started|Slicer2.6 ]] appropriate to the computer you will be bringing to the '''workshop'''.

NOTE: Intel based Macs will be supported on an experimental basis. Mac users please be sure to install the X11 application (available from the Mac OS X install disks).

* <span style="background-color: orange">'''Data to download'''</span><nowiki>: Please install the tutorial datasets </nowiki>[http://share.spl.harvard.edu/share/birn/public/software/tutorial-with-dicom.zip tutorial-with-dicom.zip],[/Wiki/images/2/2d/SlicerSampleDTI.zip SlicerSampleDTI.zip] and [/Wiki/images/f/f0/Dwi-dicom.zip dwi-dicom.zip].

''''''

== Agenda 9:00 AM - 4:15 PM ==

* 9:00 am - 9:15 am '''Goals of '''Workshop''', Introduction to the NAMIC Kit'''
* 9:15 am - 9:30 am Preliminary session: checking for software and data installation.

[http://www.surveymonkey.com/Users/17397552/Surveys/927242812784/729AA2A6-BF84-47EF-964D-BD7B957C31A0.asp?U=927242812784&DO_NOT_COPY_THIS_LINK DTI]

* 9:30 am - 10:45 am '''Slicer Basics - Hands-on Session 1 (Sonia Pujol) '''
** Slicer Interface Overview
** Loading Data: Volumes, Models, Scenes
** Interacting with Images and Models
* 10:45 am - 11:00 am Coffee-break
* 11:00 pm - 12:30 pm '''Slicer Advanced - Hands-on Session 2 (Sonia Pujol) '''
** Diffusion Weighted Imaging tools within Slicer: Nrrd file format

[[Dartmouth-DWI-parameters|DWI parameters]]

* 12:30 pm - 2:00 pm '''Lunch Break'''
* 2:00 pm - 4:00 pm '''Slicer Advanced - Hands-on Session 3 (Sonia Pujol)'''
** Diffusion Weighted Imaging tools within Slicer: DTI processing and visualization
* 4:00 pm - 4:15 pm '''Feedback by participants and Conclusion '''

<br /> Back to [[Training:Main|'''Training'''<nowiki>:Main</nowiki>]]

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@@ Line 32: / Line 32: @@
 Please complete the following items prior to the '''workshop'''. Support will be provided as requested.
-* <span style="background-color: orange">'''Software Installation'''</span><nowiki>: Please install the newest release of the Slicer program </nowiki>[http://www.slicer.org/slicerWiki/index.php/Slicer:Slicer2.6_Getting_Started Slicer2.6 ] appropriate to the computer you will be bringing to the '''workshop'''.
+* <span style="background-color: orange">'''Software Installation'''</span><nowiki>: Please install the newest release of the Slicer program </nowiki>[https://www.slicer.org/wiki/Slicer:Slicer2.6_Getting_Started Slicer2.6 ] appropriate to the computer you will be bringing to the '''workshop'''.
 NOTE: Intel based Macs will be supported on an experimental basis. Mac users please be sure to install the X11 application (available from the Mac OS X install disks).

@@ Line 24: / Line 24: @@
 * The [[media:DTI_CourseDescription.doc|  '''workshop''' ]]will be held on '''Wednesday November 1st, '''2006'''''' in the Demo room at the Surgical Planning Laboratory facility on Boylston Street, Boston MA. Please check [http://splweb.bwh.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street, Boston, MA] for directions.
-* To sign-up for this event, please complete the [[Media:Nov1_2006_DTI_Training_Workshop_registration_form.doc
+* To sign-up for this event, please complete the [[Media:Nov1_2006_DTI_Training_Workshop_registration_form.doc|registration form ]] and return it to the Harvard Center for Neurodegeneration and Repair ('''HCNR'''). (''Fax Number: 617 432 3364'')
 === Preparation for the '''Training''' '''Workshop''' -- ''Important Information for all attendees'' ===

@@ Line 24: / Line 24: @@
 * The [[media:DTI_CourseDescription.doc|  '''workshop''' ]]will be held on '''Wednesday November 1st, '''2006'''''' in the Demo room at the Surgical Planning Laboratory facility on Boylston Street, Boston MA. Please check [http://splweb.bwh.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street, Boston, MA] for directions.
-* To sign-up for this event, please complete the [[Media:Nov1_2006_DTI_Training_Workshop_registration_form.doc  registration form ]] and return it to the Harvard Center for Neurodegeneration and Repair ('''HCNR'''). (''Fax Number: 617 432 3364'')
+* To sign-up for this event, please complete the [[Media:Nov1_2006_DTI_Training_Workshop_registration_form.doc
 === Preparation for the '''Training''' '''Workshop''' -- ''Important Information for all attendees'' ===

@@ Line 1: / Line 1: @@
-<div class="thumb tright"><div style="width:193px;">[[Image:HCNR_logo_cbd.jpg|[[Image:HCNR_logo_cbd.jpg]]]]<div class="thumbcaption">[[Image:Slicer-training-2006-11-01.png|[[Image:250px-Slicer-training-2006-11-01.png]]]]</span></span>
+[[Image:Slicer-training-2006-11-01.png|thumb|right|250px|[[Image:HCNR_logo_cbd.jpg]]]]
-<br />
+<br clear="all" />
 == Organization ==

@@ Line 23: / Line 23: @@
 == '''Training''' '''Workshop''' Logistics ==
-* The [/Wiki/images/8/83/DTI_CourseDescription.doc  '''workshop''' ]will be held on '''Wednesday November 1st, '''2006'''''' in the Demo room at the Surgical Planning Laboratory facility on Boylston Street, Boston MA. Please check [http://splweb.bwh.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street, Boston, MA] for directions.
+* The [[media:DTI_CourseDescription.doc|  '''workshop''' ]]will be held on '''Wednesday November 1st, '''2006'''''' in the Demo room at the Surgical Planning Laboratory facility on Boylston Street, Boston MA. Please check [http://splweb.bwh.harvard.edu:8000/pages/directions/1249Boylston/Boylston-facility.html 1249 Boylston Street, Boston, MA] for directions.
-* To sign-up for this event, please complete the [/Wiki/images/5/5e/Nov1_2006_DTI_Training_Workshop_registration_form.doc  registration form ] and return it to the Harvard Center for Neurodegeneration and Repair ('''HCNR'''). (''Fax Number: 617 432 3364'')
+* To sign-up for this event, please complete the [[Media:Nov1_2006_DTI_Training_Workshop_registration_form.doc  registration form ]] and return it to the Harvard Center for Neurodegeneration and Repair ('''HCNR'''). (''Fax Number: 617 432 3364'')
 === Preparation for the '''Training''' '''Workshop''' -- ''Important Information for all attendees'' ===