User:Haehn - Revision history

Haehn: /* Daniel Haehn's Page */

2013-03-14T14:31:18Z

Daniel Haehn's Page

2011-05-04T16:21:51Z

VMKT in Slicer4

2011-04-27T02:12:49Z

VMKT in Slicer4

2011-04-06T16:32:16Z

2011-03-01T03:56:37Z

VMTK in 3D Slicer

2011-03-01T03:52:50Z

Daniel Haehn's Page

2010-07-12T14:44:22Z

2009-11-25T10:33:32Z

2009-11-25T10:30:28Z

2009-05-19T01:27:37Z

@@ Line 8: / Line 8: @@
 |'''Daniel Haehn'''
-University of Pennsylvania<br>
+http://danielhaehn.com
-Department of Radiology <br>
 || <center>[[Image:haehn.jpg]]</center>
 |}

@@ Line 92: / Line 92: @@
 # and push it to the master
 git push
 </pre>

← Older revision		Revision as of 02:12, 27 April 2011
Line 65:		Line 65:
	git push		git push

		+	</pre>
		+
		+	Now, somebody forked the repo, made some changes we want in the master:
		+
		+	<pre>
		+	# add the remote repo
		+	git remote add jcfr https://github.com/jcfr/EMSegment4.git
		+
		+	# fetch it
		+	git fetch jcfr
		+
		+	# see diff
		+	git log -p master jcfr/master
		+
		+	# now merge the remote with our master
		+	git merge jcfr/master
		+	Updating f5d1b39..dd72623
		+	error: Your local changes to 'CMakeLists.txt' would be overwritten by merge. Aborting.
		+	Please, commit your changes or stash them before you can merge.
		+
		+	# let's revert our local changes
		+	git checkout CMakeLists.txt
		+
		+	# merge again
		+	git merge jcfr/master
		+
		+	# and push it to the master
		+	git push
	</pre>		</pre>

← Older revision		Revision as of 16:32, 6 April 2011
Line 35:		Line 35:

	This work is done in conjunction with Luca Antiga (Medical Imaging Unit, Bioengineering Department, Mario Negri Institute, Bergamo, Italy).		This work is done in conjunction with Luca Antiga (Medical Imaging Unit, Bioengineering Department, Mario Negri Institute, Bergamo, Italy).
		+
		+	==== VMKT in Slicer4 ====
		+
		+	The VMTK integration in 3D Slicer will be transitioned to Slicer4.
		+
		+	Some developer notes:
		+	<pre>
		+	# clone the fork
		+	git clone git@github.com:haehn/vmtk.git
		+
		+	# check the status
		+	git status
		+
		+	# switch to branch superbuild
		+	git checkout superbuild
		+
		+	# include upstream by editing .git/config
		+	# 17 [remote "upstream"]
		+	# 18 url = https://github.com/lantiga/vmtk.git
		+	# 19 fetch = +refs/heads/:refs/remotes/upstream/
		+
		+	# get the upstream
		+	git fetch upstream
		+
		+	# merge the latest changes to local
		+	git merge upstream/superbuild
		+
		+	# push the latest changes from upstream to fork
		+	git push
		+
		+	</pre>

	=== Images ===		=== Images ===

@@ Line 30: / Line 30: @@
 http://www.na-mic.org/Wiki/index.php/Summer2009:The_Vascular_Modeling_Toolkit_in_3D_Slicer<br>
 http://www.na-mic.org/Wiki/index.php/2010_Winter_Project_Week_The_Vascular_Modeling_Toolkit_in_3D_Slicer
 This work is done in conjunction with Luca Antiga (Medical Imaging Unit, Bioengineering Department, Mario Negri Institute, Bergamo, Italy).

← Older revision		Revision as of 03:52, 1 March 2011
Line 32:		Line 32:

	This work is done in conjunction with Luca Antiga (Medical Imaging Unit, Bioengineering Department, Mario Negri Institute, Bergamo, Italy).		This work is done in conjunction with Luca Antiga (Medical Imaging Unit, Bioengineering Department, Mario Negri Institute, Bergamo, Italy).
		+
		+	=== Images ===
		+	{\|
		+	\|[[File:Becky.png\|thumb\|400px]]\|\|[[File:Becky2.png\|thumb\|400px]]\|\|[[File:Beck3.png\|thumb\|400px]]
		+	\|}

@@ Line 6: / Line 6: @@
 ! Info ||
 |- style="vertical-align:top"
-|'''Daniel H&auml;hn'''<br>Student of Medical Informatics <br>University of Heidelberg, Germany<br>E-Mail: [mailto:haehn@bwh.harvard.edu haehn@bwh.harvard.edu] or [mailto:haehn@urz.uni-heidelberg.de haehn@urz.uni-heidelberg.de]<br>Expected Graduation: Spring 2010  || <center>[[Image:haehn.jpg]]</center>
+|'''Daniel Haehn'''
 |}
 === VMTK in 3D Slicer ===

@@ Line 11: / Line 11: @@
 === VMTK in 3D Slicer ===
-'''Project goal:''' Integration of VMTK in 3D Slicer<br>
+The Vascular Modeling Toolkit ([http://vmtk.org VMTK]) is a collection of libraries and tools for 3D reconstruction, geometric analysis, mesh generation and surface data analysis for image-based modeling of blood vessels. It should be very interesting to offer such techniques in 3D Slicer.
-The extraction of vessels in two and threedimensional images is part of many clinical analysis tasks.
+The official project page:
-Surgical and radiology procedures often involve the visualization and quantification of vessels in order
+http://www.vmtk.org/Main/VmtkIn3DSlicer
 More recent news on this project: <br>
 http://www.na-mic.org/Wiki/index.php/2009_Winter_Project_Week_Slicer_VMTK<br>
-http://www.na-mic.org/Wiki/index.php/Summer2009:The_Vascular_Modeling_Toolkit_in_3D_Slicer
+http://www.na-mic.org/Wiki/index.php/Summer2009:The_Vascular_Modeling_Toolkit_in_3D_Slicer<br>
+http://www.na-mic.org/Wiki/index.php/2010_Winter_Project_Week_The_Vascular_Modeling_Toolkit_in_3D_Slicer
 This work is done in conjunction with Luca Antiga (Medical Imaging Unit, Bioengineering Department, Mario Negri Institute, Bergamo, Italy).

@@ Line 9: / Line 9: @@
 |}
-=== Vessel Segmentation in Slicer3 ===
+=== VMTK in 3D Slicer ===
-'''Project goal:''' Implementing a vessel/tube segmentation module in Slicer3<br>
+'''Project goal:''' Integration of VMTK in 3D Slicer<br>
 '''Kick-Off:''' 10/15/2008
-'''Final Milestone:''' 03/31/2009
+'''Final Milestone 1:''' 03/31/2009
-=== VMTK Level-Set Segmentation in 3D Slicer ===
+The extraction of vessels in two and threedimensional images is part of many clinical analysis tasks.
 '''The NITRC project page including a SVN repository with the latest code: http://www.nitrc.org/projects/slicervmtklvlst/'''