User:Lantiga - Revision history

Lantiga: /* 2009 Winter project week */

2008-12-10T19:46:47Z

2009 Winter project week

Lantiga at 19:43, 10 December 2008

2008-12-10T19:43:22Z

Lantiga: /* Progress in 2008 */

2008-12-10T19:36:25Z

Progress in 2008

Lantiga: /* Progress in 2008 */

2008-12-10T19:35:35Z

Progress in 2008

Lantiga at 18:57, 10 December 2008

2008-12-10T18:57:25Z

Melonakos at 18:42, 6 November 2008

2008-11-06T18:42:06Z

Lantiga: /* Extending ITK finite difference and level set filters to anisotropic spacing */

2008-02-04T11:20:07Z

Extending ITK finite difference and level set filters to anisotropic spacing

Lantiga at 16:09, 30 January 2008

2008-01-30T16:09:14Z

Lantiga: /* 2008 Winter Project Week */

2007-11-20T08:46:08Z

2008 Winter Project Week

Lantiga at 08:45, 20 November 2007

2007-11-20T08:45:33Z

← Older revision		Revision as of 19:46, 10 December 2008
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	** Thu, Jan 8, 11.30am - 11.45am: Collaborations: Mario Negri Institute		** Thu, Jan 8, 11.30am - 11.45am: Collaborations: Mario Negri Institute

		+	* Misc
		+	** Propose addition of vtkMRMLLevelSetNode
		+	** Discuss on level set architecture
		+	** Commit first implementation of modular-solver pluggable-term level sets
		+	** Commit backwards-compatible improvement to itkCollidingFrontsImageFilter
		+	** Commit 3D test for CURVES.

	== Progress in 2008 ==		== Progress in 2008 ==

← Older revision		Revision as of 19:43, 10 December 2008
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		+	== 2009 Winter project week ==
		+
		+	* Projects
		+	** [[2009_Winter_Project_Week_Slicer_VMTK \| Slicer VMTK]]
		+	** [[2009_Winter_Project_Week_Python \| Python]]
		+
		+	* Breakouts
		+	** Wed, Jan 7, 1.00pm - 3.00pm: Python Modules (with Demian Wasserman)
		+
		+	* Presentations
		+	** Thu, Jan 8, 11.30am - 11.45am: Collaborations: Mario Negri Institute
		+
		+
	== Progress in 2008 ==		== Progress in 2008 ==

@@ Line 22: / Line 22: @@
 * NAMIC Kit
-** the adoption of the NAMIC Kit within the [[www.robocast.eu | ROBOCAST]] project, funded by the European Commission, has been pushed forward, and it is now official.
+** the adoption of the NAMIC Kit within the [http://www.robocast.eu ROBOCAST] project, funded by the European Commission, has been pushed forward, and it is now official.
 ** the development of a Slicer-based pre-operative planning workflow is underway at the University of Verona, under the guide of Dr. Roberto Foroni.

@@ Line 1: / Line 1: @@
 == Progress in 2008 ==
@@ Line 22: / Line 21: @@
 ** during the 2008 January AHM in SLC, a presentation was given at the [[2008_Winter_Project_Week_Geometry_and_Topology_processing_of_Meshes | Geometry and Topology Processing of Meshes]] breakout session.
+* NAMIC Kit
+** the adoption of the NAMIC Kit within the [[www.robocast.eu | ROBOCAST]] project, funded by the European Commission, has been pushed forward, and it is now official.
 == Extending ITK finite difference and level set filters to anisotropic spacing ==

← Older revision		Revision as of 18:57, 10 December 2008
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		+
		+	== Progress in 2008 ==
		+
		+	The NAMIC - Mario Negri Institute external collaboration has brought the following contributions to Slicer and the NAMIC kit:
		+
		+	* Python in Slicer
		+	** background: in 2007, Dan Blezek produced the first implementation of Python interface in Slicer, providing a method to access Slicer instances from Python through Tcl.
		+	** during the 2008 January project week in SLC, several sample Python command-line (i.e. non-interactive) modules have been implemented, and the vtkScriptedModule module has been extended to handle Python in addition to Tcl as a scripting language. This allowed the implementation of interactive modules in Python.
		+	** during the 2008 June project week in Boston, the Python interface has been largely improved (keeping Dan's original code as the core), in order to provide Slicer Python objects as real Python class instances, rather than thin wrappers around Tcl objects. This way, coding Python modules has become very close to coding Python-wrapped VTK.
		+	** during August 2008, the Python/Numpy interface has been improved, allowing seamless integration of Numpy objects within the Slicer Python interface.
		+
		+	* VMTK Slicer
		+	** background: during 2007, functionality for turning vmtk command lines into Slicer command-line modules had been implemented. However, need for interactive modules based on vmtk was still needed.
		+	** during 2008, a first implementation of some of the interactive components of VMTK segmentation has been created, although no code has been committed to the sandbox yet. Rather, this work will be integrated with the work of Daniel Haehn during the January 2009 project week in SLC. In this context, the addition of a vtkMRMLLevelSet node will be proposed (derived from vtkMRMLScalarVolumeNode with a poly data display node).
		+	** in the meantime, VMTK has been largely improved and now provides vessel enhancement and surface and volume mesh generation capabilities. Therefore, the integration of VMTK in Slicer will readily bring these functionalities to Slicer. In addition, the Mario Negri Institute has implemented and validated a computational fluid dynamics solver that could be interfaced with Slicer and the NAMIC kit.
		+
		+	* ITK
		+	** during the first half of 2008, the extension of the level set framework to (moderately) anisotropic voxel spacings has been committed to ITK. Work is underway to extend the sparse field level set framework to severely anisotropic spacings.
		+	** during August 2008, a first draft implementation of a modular level set framework with pluggable terms has been coded, and will tentatively be commited to the NAMIC sandbox during the January 2009 project week.
		+
		+	* Project weeks
		+	** during the 2008 January AHM in SLC, a presentation was given at the [[2008_Winter_Project_Week_Geometry_and_Topology_processing_of_Meshes \| Geometry and Topology Processing of Meshes]] breakout session.
		+
		+
		+
		+
	== Extending ITK finite difference and level set filters to anisotropic spacing ==		== Extending ITK finite difference and level set filters to anisotropic spacing ==

@@ Line 33: / Line 33: @@
 == Python modules ==
-Below is a list of Python modules that will be implemented using the [[Slicer3:Execution Model Documentation:Python | Python script plugin]] functionality.
+Below is a list of Python modules that will be implemented using the [http://www.slicer.org/slicerWiki/index.php/Slicer3:Execution_Model_Documentation:Python Python script plugin] functionality.
 ===Done===

@@ Line 5: / Line 5: @@
 * Insight/Code/Common:
-** itkLevelSetFunction
+** itkLevelSetFunction - FIXED
-** itkSegmentationLevelSetFunction
+** itkSegmentationLevelSetFunction - FIXED
 * Insight/Code/BasicFilters:
@@ Line 13: / Line 13: @@
 ** itkParallelSparseFieldLevelSetImageFilter
 ** itkSparseFieldFourthOrderLevelSetImageFilter
-** itkSparseFieldLayer
+** itkSparseFieldLevelSetImageFilter - FIXED
 Insight/Code/Algorithms:
 ** itkBinaryMinMaxCurvatureFlowFunction
-** tkCurvatureFlowFunction
+** tkCurvatureFlowFunction - FIXED
 ** itkLevelSetNeighborhoodExtractor
 ** itkLevelSetVelocityNeighborhoodExtractor
 ** itkReinitializeLevelSetImageFilter
 ** itkShapePriorSegmentationLevelSetFunction
 == 2008 Winter Project Week ==

← Older revision		Revision as of 16:09, 30 January 2008
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		+	== Extending ITK finite difference and level set filters to anisotropic spacing ==
		+
		+	This is the (tentative) list of classes that assume that spacing is isotropic (i.e. they give incorrect results for anisotropic spacings).
		+	The plan is to go in and extend them to properly account for anisotropic spacings. This addresses BUG [http://public.kitware.com/Bug/view.php?id=6156 ITK 6156].
		+
		+	* Insight/Code/Common:
		+	** itkLevelSetFunction
		+	** itkSegmentationLevelSetFunction
		+
		+	* Insight/Code/BasicFilters:
		+	** itkLevelSetFunctionWithRefitTerm
		+	** itkNormalVectorDiffusionFunction
		+	** itkParallelSparseFieldLevelSetImageFilter
		+	** itkSparseFieldFourthOrderLevelSetImageFilter
		+	** itkSparseFieldLayer
		+	** itkSparseFieldLevelSetImageFilter
		+
		+	Insight/Code/Algorithms:
		+	** itkBinaryMinMaxCurvatureFlowFunction
		+	** tkCurvatureFlowFunction
		+	** itkLevelSetNeighborhoodExtractor
		+	** itkLevelSetVelocityNeighborhoodExtractor
		+	** itkReinitializeLevelSetImageFilter
		+	** itkShapePriorSegmentationLevelSetFunction
		+	** itkThresholdSegmentationLevelSetFunction
		+
	== 2008 Winter Project Week ==		== 2008 Winter Project Week ==

@@ Line 1: / Line 1: @@
 == 2008 Winter Project Week ==
- * Python modules: Python support, existing modules and new modules
+* Python modules: Python support, existing modules and new modules
- * Transform hardening in MRML (should be finished on a local copy before the project week)
+* Transform hardening in MRML (should be finished on a local copy before the project week)
- * Localized command line modules using MRML transform hardening
+* Localized command line modules using MRML transform hardening
- * Breakout: Geometry and Topology processing of Meshes
+* Breakout: Geometry and Topology processing of Meshes
- * vmtk module
+* vmtk module
 == Python modules ==

← Older revision		Revision as of 08:45, 20 November 2007
Line 1:		Line 1:
		+	== 2008 Winter Project Week ==
		+
		+	* Python modules: Python support, existing modules and new modules
		+	* Transform hardening in MRML (should be finished on a local copy before the project week)
		+	* Localized command line modules using MRML transform hardening
		+	* Breakout: Geometry and Topology processing of Meshes
		+	* vmtk module
		+
	== Python modules ==		== Python modules ==