User:Mseeland - Revision history

Mseeland: /* Teem Python wrapping */

2009-09-14T13:46:23Z

Teem Python wrapping

Mseeland: /* LEVMAR */

2009-05-20T05:08:44Z

LEVMAR

Mseeland: /* Python processing package */

2009-05-20T05:07:25Z

Python processing package

Mseeland: /* REQUIREMENTS */

2009-04-22T18:26:15Z

REQUIREMENTS

Mseeland: /* Python processing package */

2009-04-22T09:11:02Z

Python processing package

Mseeland: /* Python processing package */

2009-04-22T09:06:40Z

Python processing package

Mseeland: /* LEVMAR */

2009-04-22T09:04:10Z

LEVMAR

Mseeland: /* LEVMAR */

2009-04-22T09:03:07Z

LEVMAR

Mseeland: /* LEVMAR */

2009-04-22T09:01:49Z

LEVMAR

Mseeland: /* Requirements for Two-Tensor Tractography module */

2009-04-22T05:37:07Z

Requirements for Two-Tensor Tractography module

@@ Line 49: / Line 49: @@
 ===Prerequisites for Two-Tensor Tractography module===
-====Teem Python wrapping====
+====Check out Two-Tensor Tractography====
+* Check out Two-Tensor Tractography from http://svn.na-mic.org/NAMICSandBox/trunk/TwoTensorTractography.
-=====BACKGROUND=====
+* Copy the Two-Tensor Tractography folder into the directory /Slicer3-build/lib/Slicer3/Modules.
 ====LEVMAR====

@@ Line 108: / Line 108: @@
 * The 2-tensor tractography depends on Levenberg-Marquardt nonlinear optimization of Sharon Peled's constrained two-tensor model. I used the following implementation for it: http://www.ics.forth.gr/~lourakis/levmar/
 * First, in lm.h you need to uncomment the line that says: #undef HAVE_LAPACK (around line 30)
 * The levmar code is enabled by compiling Teem with TEEM_LEVMAR defined (turn LEVMAR ON while doing ccmake). The include paths and library link paths also need to be defined for everything to work.
 * Here are the changes in the teem/CMakeLists.txt file that work for me:

@@ Line 144: / Line 144: @@
 ====Python processing package====
-* This package needs to be downloaded here:
+* This package can be downloaded here:
 http://pypi.python.org/pypi/processing
 * Install the package in Slicer3-lib/python-build/lib/python2.5/site-packages/

@@ Line 66: / Line 66: @@
 =====REQUIREMENTS=====
 * Ctypeslib: ctypeslib is an extension package for ctypes. It contains a ctypes code generator.
-* GCC-XML (from http://www.gccxml.org/) is required to parse C header files into an XML description.
+* GCC-XML is required to parse C header files into an XML description.
 =====GETTING THE SOFTWARE=====

@@ Line 146: / Line 146: @@
 * This package needs to be downloaded here:
 http://pypi.python.org/pypi/processing
-* The package can be installed with:
+* Install the package in Slicer3-lib/python-build/lib/python2.5/site-packages/
    python setup.py install

@@ Line 112: / Line 112: @@
 Replace the following line
-# Look for "levmar" library <http://www.ics.forth.gr/~lourakis/levmar/>
+  # Look for "levmar" library <http://www.ics.forth.gr/~lourakis/levmar/>
-OPTION(Teem_LEVMAR "Build Teem with levmar library support." OFF)
+  OPTION(Teem_LEVMAR "Build Teem with levmar library support." OFF)
-SET(Teem_LEVMAR_LIB "")
+  SET(Teem_LEVMAR_LIB "")
-IF(Teem_LEVMAR)
+  IF(Teem_LEVMAR)
-  FIND_PACKAGE(LEVMAR)
+    FIND_PACKAGE(LEVMAR)
-  IF(LEVMAR_FOUND)
+    IF(LEVMAR_FOUND)
-    ADD_DEFINITIONS(-DTEEM_LEVMAR)
+      ADD_DEFINITIONS(-DTEEM_LEVMAR)
-    SET(Teem_LEVMAR_LIB ${LEVMAR_LIBRARIES})
+      SET(Teem_LEVMAR_LIB ${LEVMAR_LIBRARIES})
-    SET(Teem_LEVMAR_IPATH ${LEVMAR_INCLUDE_DIR})
+      SET(Teem_LEVMAR_IPATH ${LEVMAR_INCLUDE_DIR})
-  ELSE(LEVMAR_FOUND)
+    ELSE(LEVMAR_FOUND)
-    # We need to set this as a cache variable, so that it will show up as
+      # We need to set this as a cache variable, so that it will show up as
-    # being turned off in the cache.
+      # being turned off in the cache.
-    MESSAGE(SEND_ERROR "Turning off Teem_LEVMAR, because it wasn't found.")
+      MESSAGE(SEND_ERROR "Turning off Teem_LEVMAR, because it wasn't found.")
-    SET(Teem_LEVMAR OFF CACHE BOOL "Build Teem with levmar library support." FORCE)
+      SET(Teem_LEVMAR OFF CACHE BOOL "Build Teem with levmar library support." FORCE)
-  ENDIF(LEVMAR_FOUND)
+    ENDIF(LEVMAR_FOUND)
-ENDIF(Teem_LEVMAR)
+  ENDIF(Teem_LEVMAR)
 with:
-# Look for "levmar" library <http://www.ics.forth.gr/~lourakis/levmar/>
+  # Look for "levmar" library <http://www.ics.forth.gr/~lourakis/levmar/>
-OPTION(Teem_LEVMAR "Build Teem with levmar library support." OFF)
+  OPTION(Teem_LEVMAR "Build Teem with levmar library support." OFF)
-IF(Teem_LEVMAR)
+  IF(Teem_LEVMAR)
-    ADD_DEFINITIONS(-DTEEM_LEVMAR)
+      ADD_DEFINITIONS(-DTEEM_LEVMAR)
-    SET(Teem_LEVMAR_PATH "/media/sda7/Programming/levmar")
+      SET(Teem_LEVMAR_PATH "/media/sda7/Programming/levmar")
-    SET(Teem_LEVMAR_LIB "${LEVMAR_LEVMAR_PATH}/levmar-build/liblevmar.a" CACHE STRING "library path")
+      SET(Teem_LEVMAR_LIB "${LEVMAR_LEVMAR_PATH}/levmar-build/liblevmar.a" CACHE STRING "library path")
-    SET(Teem_LEVMAR_IPATH "${LEVMAR_LEVMAR_PATH}/levmar-2.3" CACHE STRING "ipath")
+      SET(Teem_LEVMAR_IPATH "${LEVMAR_LEVMAR_PATH}/levmar-2.3" CACHE STRING "ipath")
-ENDIF(Teem_LEVMAR)
+  ENDIF(Teem_LEVMAR)
 and replace the pathes with your pathes.

← Older revision		Revision as of 05:37, 22 April 2009
Line 48:		Line 48:


−	===~~Requirements~~ for Two-Tensor Tractography module===	+	===Prerequisites for Two-Tensor Tractography module===
	====Teem Python wrapping====		====Teem Python wrapping====