Difference between revisions of "Slicer3:Batchmake Integration"
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Revision as of 14:52, 3 October 2007
Home < Slicer3:Batchmake IntegrationIntroduction
- Goal: Run Slicer execution modules on multiple datasets and/or explore the parameter space of those modules using local computer resources or local GRID resources
Background
- BatchMake provides an open-source toolkit for launching a controlled sequence of applications on the local computer or a GRID.
- Condor is used as the open-source toolkit that provides access to GRID resource. It also provides an easy-to-install and easy-to-configure GRID implementation/network. We highly recommend it for your GRID needs.
- BatchMake and Condor work together to sequence tasks and to allocate and monitor resources and job progress.
Status
Completed
- BatchMake Library
- Distributed via Slicer3's getbuildtest2.tcl script
- Slicer3 code location: Slicer3-lib/BatchMake
- Default distribution does not include Condor
- Can be installed by users
- Changing two BatchMake variables will configure BatchMake to use Condor
- Distributed via Slicer3's getbuildtest2.tcl script
- EMSegmenter BatchMake module
- Distributed via Slicer3's getbuildtest2.tcl script
- Slicer3 GUI Access: Filters/BatchProcessing/EMSegmenter BatchMake Module
- Slicer3 code location: Slicer3/Applications/CLI/BatchMake
- Applies EMSegmenter algorithm to a collection of data using local computer or GRID
- Distributed via Slicer3's getbuildtest2.tcl script
- GaussianBlur BatchMake module
- Distributed via Slicer3's getbuildtest2.tcl script
- Slicer3 GUI Access: Filters/BatchProcessing/GaussianBlur BatchMake Module
- Provides a simple example of how to batchmake-ify your Slicer3 modules
- Distributed via Slicer3's getbuildtest2.tcl script
= To do
- Provide documentation
- Determine how to deliver BatchMake's GRID monitoring tool with Slicer3
- Requires FLTK - will not be re-written into KWWidgets