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| − | LONI Pipeline website: http://pipeline.loni.ucla.edu
| + | <big>'''Note:''' We are migrating this content to the slicer.org domain - <font color="orange">The newer page is [https://www.slicer.org/wiki/Slicer3:Pipeline_Integration here]</font></big> |
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| − | With the release of Pipeline v4.0 in December '07, we've developed a stable and robust framework for continuing development into the future. With regards to the Slicer 3 (currently in Beta) integration, the LONI Pipeline has a complete [http://cms.loni.ucla.edu/pipeline/default.aspx?id=2134#Running%20from%20the%20command%20line command line interface] that can be used to run workflows with dynamically bound values in addition to it's GUI interface.
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| − | <code>
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| − | Usage: pipeline [OPTIONS] PIPEFILE [paramID1=value ... paramIDN=valueN]
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| − | -execute Validates then executes the specified workflow
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| − | -validate Just validates the specified workflow then exits
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| − | -display Displays all the required/enabled parameters in the
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| − | workflow
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| − | -sync Program will not exit until workflow finishes executing
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| − | -credentials=FILE Specify an XML file containing credentials to a Pipeline
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| − | server that will be needed for execution or validation.
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| − | This is not necessary if you're username and password
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| − | are saved in your list of connections in the graphical
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| − | client. Format is the following:
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| − | <?xml version="1.0" encoding="UTF-8"?>
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| − | <connections>
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| − | <conn address="cranium.loni.ucla.edu"
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| − | user="jane"
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| − | password="secret" />
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| − | </connections>
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| − | -help Prints out LONI Pipeline help. (this text)
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| − | -version Prints out the LONI Pipeline version
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| − | </code>
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| − | Using information from the [http://wiki.na-mic.org/Wiki/index.php/Slicer3:Execution_Model_Documentation#Executable_plugins_with_command_line_options Slicer3 execution model] we will add support for the --xml flag to the Pipeline command line so Slicer can use the Pipeline from it's GUI. This will occur after the release of the final version of Slicer3.
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| − | '''Developers'''<nowiki>: </nowiki>
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| − | * Celia Cheung
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| − | * Arash Payan
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| − | * Jia Wei Tam
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