Difference between revisions of "Algorithm:DataRT"

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Line 85: Line 85:
  
 
1 _airway.mha
 
1 _airway.mha
 +
 
2 _BRAINSTEM.BF.mha
 
2 _BRAINSTEM.BF.mha
 
   _brainstem .mha
 
   _brainstem .mha
 
   _brainstem.mha
 
   _brainstem.mha
 +
 
3 _CHIASM.BF.mha
 
3 _CHIASM.BF.mha
 
   _chiasm.mha
 
   _chiasm.mha
 +
 
4 _ESOPHAG.BF.mha
 
4 _ESOPHAG.BF.mha
 
   _ESOPHAGUS.BF.mha
 
   _ESOPHAGUS.BF.mha
 
   _esophagus .mha
 
   _esophagus .mha
 
   _esophagus.mha
 
   _esophagus.mha
 +
 
5 _HYPOTHAL.BF.mha
 
5 _HYPOTHAL.BF.mha
 +
 
6 _L FRTL LOBE.BF.mha
 
6 _L FRTL LOBE.BF.mha
 +
 
7 _R FRTL LOBE.BF.mha
 
7 _R FRTL LOBE.BF.mha
 +
 
8 _L SUBMAN GL.BF.mha
 
8 _L SUBMAN GL.BF.mha
 
   _l_submandib .mha
 
   _l_submandib .mha
 +
 
9 _R SUBMAN GL.BF.mha
 
9 _R SUBMAN GL.BF.mha
 
   _r_submandib .mha
 
   _r_submandib .mha
 
   _r_submandibular .mha
 
   _r_submandibular .mha
 +
 
10_L neck.mha
 
10_L neck.mha
 
   _l_neck_ln .mha
 
   _l_neck_ln .mha
 
   _l_lower_neck.mha
 
   _l_lower_neck.mha
 +
 
11_upperneck.mha
 
11_upperneck.mha
 +
 
12_l_upper_neck.mha
 
12_l_upper_neck.mha
 
   _neck_leftup .mha
 
   _neck_leftup .mha
 
   _lu_neck_ln.mha
 
   _lu_neck_ln.mha
 +
 
13_neck_leftlow.mha
 
13_neck_leftlow.mha
 +
 
14_R neck.mha
 
14_R neck.mha
 +
 
15_r_upper_neck.mha
 
15_r_upper_neck.mha
 
   _neck_rt_up.mha
 
   _neck_rt_up.mha
 
   _ru_neck_ln.mha
 
   _ru_neck_ln.mha
 
   _ru_neck_ln_i_ii .mha
 
   _ru_neck_ln_i_ii .mha
 +
 
16_neck_rt_low .mha
 
16_neck_rt_low .mha
 
   _rl_neck_ln.mha
 
   _rl_neck_ln.mha
 +
 
17_LT COCHLEA.BF.mha
 
17_LT COCHLEA.BF.mha
 
   _left_cochlea.mha
 
   _left_cochlea.mha
 
   _ltcochlea_AH.mha
 
   _ltcochlea_AH.mha
 +
 
18_RT COCHLEA.BF.mha
 
18_RT COCHLEA.BF.mha
 
   _right_cochlea .mha
 
   _right_cochlea .mha
 
   _rtcochlea_AH.mha
 
   _rtcochlea_AH.mha
 +
 
19_LARYNX.BF.mha
 
19_LARYNX.BF.mha
 
   _larynx.mha
 
   _larynx.mha
 +
 
20_heart.mha
 
20_heart.mha
 +
 
21_LT LENS.mha
 
21_LT LENS.mha
 
   _left_eye_lens .mha
 
   _left_eye_lens .mha
 +
 
22_left_eye_ball .mha
 
22_left_eye_ball .mha
 +
 
23_RT LENS.mha
 
23_RT LENS.mha
 
   _right_eye_lens.mha
 
   _right_eye_lens.mha
 +
 
24_right_eye_ball.mha
 
24_right_eye_ball.mha
 +
 
25_LT OPT NRV.BF.mha
 
25_LT OPT NRV.BF.mha
 
   _left_opt_nerve.mha
 
   _left_opt_nerve.mha
 +
 
26_RT OPT NRV.BF.mha
 
26_RT OPT NRV.BF.mha
 
   _right_opt_nerve .mha
 
   _right_opt_nerve .mha
 +
 
27_LT PAROTID.BF.mha
 
27_LT PAROTID.BF.mha
 
   _l_parotid .mha
 
   _l_parotid .mha
Line 141: Line 167:
 
   _parotid-left.mha
 
   _parotid-left.mha
 
   _parotid_left.mha
 
   _parotid_left.mha
 +
 
28_RT PAROTID.BF.mha
 
28_RT PAROTID.BF.mha
 
   _parotid-right .mha
 
   _parotid-right .mha
Line 147: Line 174:
 
   _right_parotid .mha
 
   _right_parotid .mha
 
   _right_parotid.mha
 
   _right_parotid.mha
 +
 
29_LT RETINA.BF.mha
 
29_LT RETINA.BF.mha
 +
 
30_RT RETINA.BF.mha
 
30_RT RETINA.BF.mha
 +
 
31_LT. GLOBE.mha
 
31_LT. GLOBE.mha
 +
 
32_RT. GLOBE.mha
 
32_RT. GLOBE.mha
 +
 
33_LT. MASTOID.mha
 
33_LT. MASTOID.mha
 +
 
34_RT. MASTOID.mha
 
34_RT. MASTOID.mha
 +
 
35_MANDIBLE.BF.mha
 
35_MANDIBLE.BF.mha
 
  _mandible.mha
 
  _mandible.mha
 +
 
36_ODONTOID.mha
 
36_ODONTOID.mha
 +
 
37_ORAL CAVITY.BF.mha
 
37_ORAL CAVITY.BF.mha
 
   _oral_cav_oro.mha
 
   _oral_cav_oro.mha
 
   _oral_cavity .mha
 
   _oral_cavity .mha
 
   _oral_cavity.mha
 
   _oral_cavity.mha
 +
 
38_PITUIT.BF.mha
 
38_PITUIT.BF.mha
 +
 
39_SPINAL CORD.BF.mha
 
39_SPINAL CORD.BF.mha
 
   _spcord_AH.mha
 
   _spcord_AH.mha
 
   _spinal_cord .mha
 
   _spinal_cord .mha
 
   _cord.mha
 
   _cord.mha
 +
 
40_left_lung .mha
 
40_left_lung .mha
 
   _left_lung.mha
 
   _left_lung.mha
 +
 
41_right_lung.mha
 
41_right_lung.mha
 +
 
42_lt bonycanthus.mha
 
42_lt bonycanthus.mha
 +
 
43_rt bonycanthus.mha
 
43_rt bonycanthus.mha
 +
 
44_skin.mha
 
44_skin.mha
 +
 
45_thyroid .mha
 
45_thyroid .mha
 
   _thyroid.mha
 
   _thyroid.mha
 +
 
46_trachea .mha
 
46_trachea .mha
 
   _trachea.mha
 
   _trachea.mha
 +
 
47_LT LAC GLD.BF.mha
 
47_LT LAC GLD.BF.mha
 +
 
48_RT LAC GLD.BF.mha
 
48_RT LAC GLD.BF.mha
 +
 
49_const_esoph .mha
 
49_const_esoph .mha
 
   _constrictors.mha
 
   _constrictors.mha
 
   _eos_cons.mha
 
   _eos_cons.mha
 +
 
48_oropharynx.mha
 
48_oropharynx.mha
 +
 
50_CTV primary.mha
 
50_CTV primary.mha
 
   _ctv_primX.mha
 
   _ctv_primX.mha
Line 187: Line 237:
 
   _ctv_prim.mha
 
   _ctv_prim.mha
 
   _ac_ctv_primary.mha
 
   _ac_ctv_primary.mha
 +
 
51_ctv1_hr_iii_iv_v.mha
 
51_ctv1_hr_iii_iv_v.mha
 
   _ctv2_lr_ii.mha
 
   _ctv2_lr_ii.mha
 +
 
52_ctv_l_neck.mha
 
52_ctv_l_neck.mha
 
   _ctvLT_lnkX.mha
 
   _ctvLT_lnkX.mha
 
   _ctvLTnkX.mha
 
   _ctvLTnkX.mha
 +
 
53_ctv_ll_neck .mha
 
53_ctv_ll_neck .mha
 
   _ctv_ll_neck.mha
 
   _ctv_ll_neck.mha
 +
 
54_ctv_lu_neck .mha
 
54_ctv_lu_neck .mha
 
   _ctv_lu_neck.mha
 
   _ctv_lu_neck.mha
 +
 
55_ctv_r_neck.mha
 
55_ctv_r_neck.mha
 
   _ctvRT_lnkX.mha
 
   _ctvRT_lnkX.mha
 
   _ctvRTnkX.mha
 
   _ctvRTnkX.mha
 +
 
56_ctv_rl_neck_ln.mha
 
56_ctv_rl_neck_ln.mha
 
   _ct_rl_neck.mha
 
   _ct_rl_neck.mha
 +
 
57_ctv_ru_neck .mha
 
57_ctv_ru_neck .mha
 
   _ctv_ru_neck_ln.mha
 
   _ctv_ru_neck_ln.mha
 +
 
58_ctv_nose.mha
 
58_ctv_nose.mha
 +
 
59_ctv_med_ln.mha
 
59_ctv_med_ln.mha
 +
 
60_combCTVnds.mha
 
60_combCTVnds.mha
 
   _combCTVnodes.mha
 
   _combCTVnodes.mha
 +
 
61_GTV primary.mha
 
61_GTV primary.mha
 
   _gtv_primary .mha
 
   _gtv_primary .mha
Line 212: Line 273:
 
   _gtv_primx.mha
 
   _gtv_primx.mha
 
   _gtv .mha
 
   _gtv .mha
 +
 
62_gtv_med_ln.mha
 
62_gtv_med_ln.mha
 +
 
63_GTV node.mha
 
63_GTV node.mha
 
   _gtv_node.mha
 
   _gtv_node.mha
 +
 
64_gtv_rul.mha
 
64_gtv_rul.mha
 +
 
65_gtv_nose.mha
 
65_gtv_nose.mha

Latest revision as of 19:30, 16 April 2011

Home < Algorithm:DataRT

This describes the pilot data set provided by the RT DBP (Greg Sharp, MGH).

The data set contains 16 patients. All patients have the initial CT scan with relevant structures outlined. Six patients also have a follow up (post-treatment) scan with no segmentations.

All scan slices are 512x512; the number of slices varies a bit (112-118). The voxel size is between .48x.48x2.5mm^3 and 1.13x1.13x2.5mm^3, most of them are around .9mm in plane.

The segmentation availability (which stuructures are segmented) varies across patients as it depends on the tumor location. The total of 65 structures are present in these scans. The table below shows which structures (65 rows) are available for wich patients (16 columns):

    1  2  3  4  5  6 76 77 79 80 84 88 90 91 95 97
  1 1  1  1  1  0  1  0  0  0  0  0  0  0  0  0  0
  2 1  1  1  1  1  1  0  1  1  0  1  1  1  1  1  1
  3 1  1  1  1  1  1  0  0  0  0  1  0  0  0  0  0
  4 0  1  0  1  1  0  1  0  1  0  1  1  1  1  1  0
  5 1  0  0  1  1  0  0  0  0  0  0  0  0  0  0  0
  6 0  1  0  0  0  0  0  0  0  0  0  0  0  0  0  0
  7 0  1  0  0  0  0  0  0  0  0  0  0  0  0  0  0
  8 0  0  0  0  1  0  0  0  0  0  0  0  0  1  0  0
  9 0  0  0  0  1  0  0  0  1  0  0  0  0  1  0  0
 10 0  0  1  0  0  0  0  0  1  0  1  0  0  0  0  0
 11 1  0  0  0  0  0  0  0  0  0  0  0  0  0  0  0
 12 1  0  0  0  0  0  0  0  1  0  0  0  0  0  0  1
 13 0  0  0  0  0  0  0  0  0  0  0  0  0  0  0  1
 14 0  0  1  0  0  0  0  0  0  0  0  0  0  0  0  0
 15 1  0  1  0  0  0  0  0  0  0  1  1  0  0  0  1
 16 0  0  0  0  0  0  0  0  0  0  1  1  0  0  0  1
 17 1  1  1  1  1  1  0  0  0  0  0  0  0  0  0  0
 18 1  1  1  1  1  1  0  0  0  1  0  0  0  0  0  0
 19 0  1  0  1  0  0  1  1  1  0  1  1  1  1  1  1
 20 0  1  0  0  0  0  0  0  0  0  0  0  0  0  0  0
 21 1  1  1  1  1  1  0  0  0  0  1  0  0  0  0  0
 22 0  0  0  0  0  0  0  0  0  0  1  0  0  0  0  0
 23 1  1  1  1  1  1  0  0  0  1  1  0  0  0  0  0
 24 0  0  0  0  0  0  0  0  0  0  1  0  0  0  0  0
 25 1  1  1  1  1  1  0  0  0  0  1  0  0  0  0  0
 26 1  1  1  1  1  1  0  0  0  1  1  0  0  0  0  0
 27 1  1  1  1  1  1  1  1  1  1  1  1  1  1  1  1
 28 1  1  1  1  1  1  1  1  1  1  1  1  1  1  0  1
 29 0  1  0  1  0  0  0  0  0  0  0  0  0  0  0  0
 30 0  1  0  1  0  0  0  0  0  0  0  0  0  0  0  0
 31 0  0  0  0  0  1  0  0  0  0  0  0  0  0  0  0
 32 0  0  0  0  0  1  0  0  0  0  0  0  0  0  0  0
 33 1  1  1  1  1  1  0  0  0  0  0  0  0  0  0  0
 34 1  1  1  1  1  1  0  0  0  0  0  0  0  0  0  0
 35 0  0  0  1  1  0  1  0  1  1  1  1  1  1  1  1
 36 1  1  1  1  1  1  0  0  0  0  0  0  0  0  0  0
 37 0  1  0  1  0  0  1  1  1  1  1  0  1  1  1  1
 38 1  0  0  1  1  0  0  0  0  0  0  0  0  0  0  0
 39 1  1  1  1  1  1  1  1  1  1  1  1  1  1  1  1
 40 0  0  0  0  0  0  1  0  1  0  1  1  0  0  1  1
 41 0  1  0  0  0  0  1  0  1  0  1  1  0  0  1  1
 42 1  0  0  0  0  0  0  0  0  0  0  0  0  0  0  0
 43 1  0  0  0  0  0  0  0  0  0  0  0  0  0  0  0
 44 1  1  1  1  1  1  0  0  0  0  0  0  0  0  0  0
 45 0  1  0  0  0  0  1  0  0  0  1  1  0  0  1  1
 46 0  1  0  0  0  0  1  1  1  0  1  0  1  1  1  1
 47 0  0  0  0  0  0  0  0  0  0  0  0  0  0  0  0
 48 0  0  0  0  1  0  1  0  0  0  0  0  0  0  0  0
 49 0  1  0  0  0  0  1  1  1  0  1  1  1  1  1  1
 50 1  0  1  1  1  1  0  0  1  0  1  1  1  1  0  1
 51 0  0  0  0  0  0  1  0  0  0  0  0  0  0  0  0
 52 0  0  0  1  1  1  0  0  0  0  0  0  0  0  0  0
 53 0  1  0  0  0  0  0  0  0  0  0  0  1  1  1  0
 54 0  1  0  0  0  0  0  0  0  0  0  0  1  1  1  0
 55 0  0  0  1  1  1  0  0  0  0  0  0  0  1  1  0
 56 0  1  0  0  0  0  0  0  0  0  0  0  1  0  0  0
 57 0  1  0  0  0  0  0  0  0  0  0  0  1  0  0  0
 58 0  1  0  0  0  0  0  0  0  0  0  0  0  0  0  0
 59 0  1  0  0  0  0  0  0  0  0  0  0  0  0  0  0
 60 0  1  1  0  0  0  0  0  0  0  0  0  0  0  0  0
 61 1  0  1  1  1  1  1  0  0  0  1  0  0  1  1  1
 62 0  1  0  0  0  0  0  0  0  0  0  0  0  0  0  0
 63 0  0  1  1  0  0  0  1  0  0  1  0  1  1  1  0
 64 0  1  0  0  0  0  0  0  0  0  0  0  0  0  0  0
 65 0  0  0  0  0  0  0  0  0  0  0  0  0  0  0  0


The list below contains the names of the segmentation files in the data set, which also encode the structure index and name (so some of them appear several times with slightly different names):

1 _airway.mha

2 _BRAINSTEM.BF.mha

 _brainstem .mha
 _brainstem.mha

3 _CHIASM.BF.mha

 _chiasm.mha

4 _ESOPHAG.BF.mha

 _ESOPHAGUS.BF.mha
 _esophagus .mha
 _esophagus.mha

5 _HYPOTHAL.BF.mha

6 _L FRTL LOBE.BF.mha

7 _R FRTL LOBE.BF.mha

8 _L SUBMAN GL.BF.mha

 _l_submandib .mha

9 _R SUBMAN GL.BF.mha

 _r_submandib .mha
 _r_submandibular .mha

10_L neck.mha

 _l_neck_ln .mha
 _l_lower_neck.mha

11_upperneck.mha

12_l_upper_neck.mha

 _neck_leftup .mha
 _lu_neck_ln.mha

13_neck_leftlow.mha

14_R neck.mha

15_r_upper_neck.mha

 _neck_rt_up.mha
 _ru_neck_ln.mha
 _ru_neck_ln_i_ii .mha

16_neck_rt_low .mha

 _rl_neck_ln.mha

17_LT COCHLEA.BF.mha

 _left_cochlea.mha
 _ltcochlea_AH.mha

18_RT COCHLEA.BF.mha

 _right_cochlea .mha
 _rtcochlea_AH.mha

19_LARYNX.BF.mha

 _larynx.mha

20_heart.mha

21_LT LENS.mha

 _left_eye_lens .mha

22_left_eye_ball .mha

23_RT LENS.mha

 _right_eye_lens.mha

24_right_eye_ball.mha

25_LT OPT NRV.BF.mha

 _left_opt_nerve.mha

26_RT OPT NRV.BF.mha

 _right_opt_nerve .mha

27_LT PAROTID.BF.mha

 _l_parotid .mha
 _left_parotid.mha
 _parotid-left.mha
 _parotid_left.mha

28_RT PAROTID.BF.mha

 _parotid-right .mha
 _parotid_right .mha
 _r_parotid .mha
 _right_parotid .mha
 _right_parotid.mha

29_LT RETINA.BF.mha

30_RT RETINA.BF.mha

31_LT. GLOBE.mha

32_RT. GLOBE.mha

33_LT. MASTOID.mha

34_RT. MASTOID.mha

35_MANDIBLE.BF.mha

_mandible.mha

36_ODONTOID.mha

37_ORAL CAVITY.BF.mha

 _oral_cav_oro.mha
 _oral_cavity .mha
 _oral_cavity.mha

38_PITUIT.BF.mha

39_SPINAL CORD.BF.mha

 _spcord_AH.mha
 _spinal_cord .mha
 _cord.mha

40_left_lung .mha

 _left_lung.mha

41_right_lung.mha

42_lt bonycanthus.mha

43_rt bonycanthus.mha

44_skin.mha

45_thyroid .mha

 _thyroid.mha

46_trachea .mha

 _trachea.mha

47_LT LAC GLD.BF.mha

48_RT LAC GLD.BF.mha

49_const_esoph .mha

 _constrictors.mha
 _eos_cons.mha

48_oropharynx.mha

50_CTV primary.mha

 _ctv_primX.mha
 _ctv_primary.mha
 _ctv_primary .mha
 _ctv_prim.mha
 _ac_ctv_primary.mha

51_ctv1_hr_iii_iv_v.mha

 _ctv2_lr_ii.mha

52_ctv_l_neck.mha

 _ctvLT_lnkX.mha
 _ctvLTnkX.mha

53_ctv_ll_neck .mha

 _ctv_ll_neck.mha

54_ctv_lu_neck .mha

 _ctv_lu_neck.mha

55_ctv_r_neck.mha

 _ctvRT_lnkX.mha
 _ctvRTnkX.mha

56_ctv_rl_neck_ln.mha

 _ct_rl_neck.mha

57_ctv_ru_neck .mha

 _ctv_ru_neck_ln.mha

58_ctv_nose.mha

59_ctv_med_ln.mha

60_combCTVnds.mha

 _combCTVnodes.mha

61_GTV primary.mha

 _gtv_primary .mha
 _gtv_primary.mha
 _gtv_primx.mha
 _gtv .mha

62_gtv_med_ln.mha

63_GTV node.mha

 _gtv_node.mha

64_gtv_rul.mha

65_gtv_nose.mha